PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_276627g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 255aa MW: 28767.2 Da PI: 5.4362 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 33.7 | 1e-10 | 2 | 41 | 58 | 97 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelall 97 ++sl+yeA+ r+ +P yG+vg++++++++++q+++e +l MA_276627g0010 2 FRSLLYEACGRIVNPTYGSVGLLWSGNWHICQAAVESVLK 41 89********************************998765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.1E-6 | 2 | 38 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
IFRSLLYEAC GRIVNPTYGS VGLLWSGNWH ICQAAVESVL KGYPLQPLNL LEIGSPPAAA 60 AAAAAPQSME TVADKLRNVK SQGRFKRPLY RKPSTDIKQL NLHALKDEEA EGSLAGSQVY 120 NLRWRRCYPK EFQLINVEPA TNFLSTDSSS DSDDLARLKT GFENVKFNCN PVEYRETRDQ 180 SEGIENQSED PLQNLFQQND NYEVENIMRA ELTDEKNLEL ELTLGSSMSE TTHTHRKQLG 240 RNCMDRSPLR LSLSQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67100.1 | 8e-25 | LOB domain-containing protein 40 |