PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_26547g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 430aa    MW: 47552.8 Da    PI: 5.3892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_26547g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.2e-21173223155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+ykGVr+++ +g+W+AeIrdps+     r +lg+++taeeAa+a+++a++k++g
  MA_26547g0010 173 SKYKGVRQRR-WGKWAAEIRDPSK---GVRLWLGTYDTAEEAAQAYDKAARKING 223
                    89*****998.**********965...4************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-14173223IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-22173232IPR016177DNA-binding domain
CDDcd000181.51E-33173230No hitNo description
PROSITE profilePS5103223.433174231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-30174232IPR001471AP2/ERF domain
SMARTSM003801.5E-36174237IPR001471AP2/ERF domain
PRINTSPR003674.6E-10175186IPR001471AP2/ERF domain
PRINTSPR003674.6E-10197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MPGPQISPQS LCTTTALKTS KKMRGQNKVN KQYDTDNGRV QRPFAALTRT VRVICTDPDA  60
TDSSSDEEAV RFEPKRVVRE IHIPADCSPS VSDSEDEYQL PICSSLSFSQ FEEESKDTWQ  120
EFYAPHEKKP KKKTKGKKVS RKQRTVLKAF ERVKSGRVSK SSPALRSFAD KTSKYKGVRQ  180
RRWGKWAAEI RDPSKGVRLW LGTYDTAEEA AQAYDKAARK INGPSAPTNF SSSCTSYTSQ  240
KNPSRAAKSQ TYDNQWIAAH SVMTRSSANA KMKTITIESY MTSSSASLSC ISEEGSEEGS  300
DEDWIPVSSL ASAPTVSTSY SLIDDVGSED ASCSLMIEHS TSCSTSSDFL ADCLEDNGHQ  360
GSNNEFLQKL GGSNLLLDDT LDLIEQLHTE NEDNPLVDFL IPPINEQCCN ELELTYPDSL  420
SMNNAAMNLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-18175230359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127141KKPKKKTKGKKVSRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1187380.0BT118738.1 Picea glauca clone GQ04009_L20 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RXU01e-140A0A0C9RXU0_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5206_2819 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-17ERF family protein