PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_26324g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 612aa    MW: 66974.6 Da    PI: 9.3493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_26324g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-0586108123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C+ C+k F r  nL+ H r H
  MA_26324g0010  86 FICEVCSKGFQRDQNLQLHRRGH 108
                    89*******************88 PP
2zf-C2H210.90.0014162184123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC  C+k++  +s+ k H +t+
  MA_26324g0010 162 WKCDRCSKRYAVQSDWKAHSKTC 184
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-685108No hitNo description
Gene3DG3DSA:3.30.160.603.9E-585108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.80386108IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.53E-6157182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSNITSASGE ASVSSGNTIA MADKERARQP PPNQFSTPSS ADGAGNISTA QQNPVKKRKR  60
NLPGNPDPDA EVIALSPRTL MATNRFICEV CSKGFQRDQN LQLHRRGHNL PWKLKQRTSS  120
EMRKRVYICP ESTCVHHDPT RALGDLTGIK KHFCRKHGEK KWKCDRCSKR YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEDSTRI SEGLSRLPQV APSSSPGKSD  240
VPSPNVRVPS HLAEGSVRSG HSLQFLGHED KSTSTQQASN PIEQIHPSGF TYGTKTMQLG  300
PVGLAGHEYE SQLRRNPHVF PMPMSTTSTN SGSMYSSIYS SRFHGMNTAN FGGDLSPGND  360
VTSDGNTSYH STPSMSATAL LQKAAQMGAT ASNAPLLSAL RMAGSGLHSA WPSRREGLIA  420
SNLKDQFQSF RPMDNDISAC NSLRSQYSFS ESSIQQRSSE NPGHLHESSI DPRLQPFTPS  480
GLYITENHMQ PDTFGGQFMD PCTSFGGNGH PRKNMRESQL QGRIPMIDNP WGNLNLEVGG  540
DKLTRDFLGV GEVAGGIPRA LSVRDIHVNG RPQFASGKDH LNSYINDIKY PTDSPNSHGG  600
KAQSPQKSWD VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33158221366Zinc finger protein JACKDAW
5b3h_F1e-33158221366Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6785880.0EF678588.1 Picea sitchensis clone WS02928_O04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242235.11e-123PREDICTED: protein indeterminate-domain 11-like isoform X2
TrEMBLB8LRQ30.0B8LRQ3_PICSI; Uncharacterized protein
STRINGXP_010242234.11e-122(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-111C2H2 family protein