PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_246350g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 308aa    MW: 35155.6 Da    PI: 6.1923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_246350g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87e-17244308161
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvl 61 
                     f+k+ tpsdv+k++rlv+pk++ae++     +  +e++  l +ed++g+ W+++++y+++s++yvl
  MA_246350g0010 244 FDKTVTPSDVGKLNRLVIPKQHAEKYlpldtD-ANEKGLLLNFEDSTGKAWRFRYSYWNSSQSYVL 308
                     89***************************964.456888*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.6572107IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.3E-25235308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-16241308IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-14242308No hitNo description
PfamPF023626.2E-14244308IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MQRHTTVSIS DCSSSAGELE GNKGERYSNL ERMGSRKNIL SEGYWLDSHD SGGENNSRKF  60
NNAPAEAAGV EQYKGMVPQP NGQWGTQIYE KRQRVWPGIF NGEDKTANVI AAFKFDRCDT  120
IKXEKRQRVW PGIFNGEEKT ANVIAAFKFD RCDTINDLKP QQEVGHLETR FLDVHCKGEI  180
VDMLISKDTC EEEQSHSKNS DRSRCSETDQ EEEEKSSKGS ERNYNPGVGE GDKKASLWRR  240
EHMFDKTVTP SDVGKLNRLV IPKQHAEKYL PLDTDANEKG LLLNFEDSTG KAWRFRYSYW  300
NSSQSYVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-38240308472B3 domain-containing transcription factor NGA1
5os9_B5e-38240308472B3 domain-containing transcription factor NGA1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.18e-52related to ABI3/VP1 1