PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_2446g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 489aa    MW: 54921.3 Da    PI: 6.4089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_2446g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18235295256
           AP2   2 gykGVrwdkkrgrWvAeIrdpseng......kr.krfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr+++ +g+WvAeIr p+++       +  +r +lg+f+tae+Aa a+++ + kl+ge
  MA_2446g0010 235 LYRGVRQRH-WGKWVAEIRLPRDRTrlirlpRDrTRLWLGTFDTAEDAALAYDQEAYKLRGE 295
                   59******9.***********9955586555339**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.16E-28234304No hitNo description
SMARTSM003808.2E-36235308IPR001471AP2/ERF domain
PROSITE profilePS5103222.761235302IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-20235303IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-28235303IPR001471AP2/ERF domain
PRINTSPR003671.1E-10236247IPR001471AP2/ERF domain
PfamPF008479.0E-12236295IPR001471AP2/ERF domain
PRINTSPR003671.1E-10268284IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASTSRSMQG VYVSSSMGMA SNRNEDWCDI KAMNSQQSFS RLLEASTPRP SSNQASSSCS  60
RREDMPTAES RVQARNLSER DDSSSSLFQN KSSSSSSSSH LFSFPSNYPQ VISSINSSPS  120
SSTLQQHGSE FFYWNQITTQ AFPTHESTHQ AIPFPQQQIC FTNLQSPVQQ QQLQFQSGFP  180
LVSFNNQQNL QEQQYQQQLL RHWSDALNLS PRGQLMKHGK HHDRRGFALA RPMKLYRGVR  240
QRHWGKWVAE IRLPRDRTRL IRLPRDRTRL WLGTFDTAED AALAYDQEAY KLRGENARLN  300
FPHLFLNKGS TSPKACSVVA APEEGNLQQK SDGGRNSTTS STSTSALTAN AAHQLGSPAA  360
EGISDTAHAK SMDVEVKTDP EISAYEANTT LAPPAESGSE DFFKNEPQDP QFHTWPASPE  420
YNIWGDLDEN WLNSVPALET DMAWDVLFHN PFDSYVEGGD SDHKLETQGQ ASQELHSPPQ  480
QMYVWKDCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-18234302160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6761590.0EF676159.1 Picea sitchensis clone WS02715_N03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LK980.0B8LK98_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-37ERF family protein