PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_24271g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 513aa MW: 56875.1 Da PI: 6.3607 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9.3e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++++G g+W+t +++ g+ R++k+c++rw +yl MA_24271g0020 14 KGPWTPEEDQKLTDYIQRHGHGSWRTLPKHAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +v+++ lG++ W++Ia++++ gRt++++k++w+++l MA_24271g0020 67 RGKFSFEEEQTIVQLHGVLGNK-WSAIASHLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.962 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.34E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.428 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MGRAPCCDKD GLKKGPWTPE EDQKLTDYIQ RHGHGSWRTL PKHAGLLRCG KSCRLRWTNY 60 LRPDIKRGKF SFEEEQTIVQ LHGVLGNKWS AIASHLPGRT DNEIKNYWNT HLKKRLLQMG 120 IDPVTHRPRI DLFNFSNMTQ LLAPASLSHM AAQWERARLE AVTTDYLRVL AAYRSAAMMQ 180 QASHSQSSTM DADHLMSYLR NQLGDAAFCN MPDNMNSAMA QANWALNSEN LGSSDSNALA 240 TQIIMEQLQV PAAQIMRNLQ SQTQNTAELS ACSLPLNGTS MTQHSSPTST LSSLDGFHTL 300 KAEQRNNNSN KNNVPNSHES TKINNQALLQ DQGYDNLMNA SASLVQQHSR SQDNNSLSTD 360 QLVTSPILWP EEQFLGISKN NNSESVPALV STTSSPNIFN DTSDMFHDAS PVQNSQNCMR 420 SDCISTNGYG LPADLFLDFG LETTKQQNVE TMAPATSTTH VLSGSSSWSE MQNSLLSGSS 480 SWSEMQNSHE DGGDYWSNML KYVGESSISN STL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00180 | DAP | Transfer from AT1G34670 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF601074 | 0.0 | EF601074.1 Picea glauca R2R3-MYB transcription factor MYB11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A5JYF5 | 0.0 | A5JYF5_PICGL; R2R3-MYB transcription factor MYB11 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 5e-85 | myb domain protein 93 |