PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_2421g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARF
Protein Properties Length: 776aa    MW: 85337.7 Da    PI: 7.8795
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_2421g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23131232199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f k+lt+sd+++ g +++p+ +ae++       + ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD +vF   ++ ++
  MA_2421g0010 131 FAKTLTQSDANNGGGFSVPRYCAETIfprldysNDPPVQ--TVLARDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVFL--RSATG 223
                   89*****************************95545444..89***********************************************..44799 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   el+v+v+r+
  MA_2421g0010 224 ELCVGVRRS 232
                   99****997 PP
2Auxin_resp107.11.9e-35305388183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   aa++a+++++Fe vY+Prast+eF+vk+++v++al+ ++s+GmRfkmafetedss++++ +Gt+++++ +dpv Wp+S+Wr+L+
  MA_2421g0010 305 AATRAAMGQPFEAVYYPRASTPEFCVKAQSVNAALSLQWSAGMRFKMAFETEDSSRISWfMGTISSIQYADPVIWPKSPWRLLQ 388
                   68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.03E-28123236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-36126245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-20130231No hitNo description
PfamPF023625.2E-21131232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.858131233IPR003340B3 DNA binding domain
SMARTSM010194.6E-20131233IPR003340B3 DNA binding domain
PfamPF065079.1E-31305388IPR010525Auxin response factor
PROSITE profilePS5174514.05690770IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MERRLKKGED GGRGRGQGVP GLDSQLWHAC AGGMVEMPLV GSKVYYFPQG HAEHASTPPD  60
FPLDLNIAPS VLCTVVSVAY LADADTDEVY ARIHLQPDGG RIRGALGDDN DNDSSTLPPP  120
TTTSGEKPVS FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSNDPPVQT VLARDVHGEV  180
WKFRHIYRGT PRRHLLTTGW STFVNQKKLV AGDAIVFLRS ATGELCVGVR RSTRSGGGFA  240
STAAESGPWH WPGSTPYRSA SSSLKGGPYD NFSDFLDTSN RLMRPNNSGF ARNRGKVSAK  300
SVVEAATRAA MGQPFEAVYY PRASTPEFCV KAQSVNAALS LQWSAGMRFK MAFETEDSSR  360
ISWFMGTISS IQYADPVIWP KSPWRLLQVT WDEPDLLQSV KRVSPWMVEV VSNMPAIQMT  420
PFMLPKKKLR VTQPPEFHLE GQRGIMGLQM ATLTSNVLGQ INPWHSVSDN VPAGMQGARH  480
DTIYGISFSD IHQNNIQSRL FLDNVKHQDP VAMSTRVSTE LNIGSLSQLE KSEVHNSLSC  540
LLTMGNSSQS EHKISRCSTS STSKSTSFLL FGKPIHTDQS PRSQQQQQQS GVSSADGLGF  600
QSFNDTGSPG LTNNSSTDVN QEVEDRVQKL KKEKAGGSKI SDNSSLTHQH GNSLDAAGTN  660
GVNGLQRFKH ETGILSLKKN THEKTSEDTV LPCKVFSETE EVGRTLDLTM FSSYEQLYDR  720
LRKMFGIEDL ELSNRVLYKD IGNIMRHAGE EPYGDFMKTV RRLTILSESG SDNMSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-712140918353Auxin response factor 1
4ldy_B1e-712140918353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1198320.0BT119832.1 Picea glauca clone GQ04110_M14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253698.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0D6QZZ40.0A0A0D6QZZ4_ARACU; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]