PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_23673g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family RAV
Protein Properties Length: 617aa    MW: 69154.5 Da    PI: 7.9072
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_23673g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.6e-13188236155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+ykGV   + +grW A+I++      ++r++lg+f  +e+Aa+a+++a++k++g
  MA_23673g0010 188 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNREEDAARAYDRAALKFRG 236
                    78****9888.8*********3.....5*************************98 PP
2B398.73.5e-31325427199
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+k+ tpsdv+k++rlv+pk++ae++     +++e++  l +ed+ gr+W+++++y+ +s++yvltkGW++Fvk+++L++gD+v F++ +++  +l
  MA_23673g0010 325 FDKAVTPSDVGKLNRLVIPKQHAEKYfpldVNSSERGLVLNFEDKMGRVWRFRYSYWSSSQSYVLTKGWSRFVKDKKLEAGDIVSFYRGSTQPHQL 420
                    89***************************9555568899************************************************887799999 PP

                    EEEEE-S CS
             B3  93 vvkvfrk 99 
                    ++ ++r+
  MA_23673g0010 421 YINWRRR 427
                    9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-17188244IPR016177DNA-binding domain
CDDcd000187.93E-15188243No hitNo description
PfamPF008477.7E-8189236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-21189244IPR001471AP2/ERF domain
SMARTSM003801.4E-28189250IPR001471AP2/ERF domain
PROSITE profilePS5103220.626189244IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.1E-39321429IPR015300DNA-binding pseudobarrel domain
CDDcd100176.47E-22323412No hitNo description
SuperFamilySSF1019361.57E-29323427IPR015300DNA-binding pseudobarrel domain
PfamPF023626.1E-28325427IPR003340B3 DNA binding domain
SMARTSM010195.7E-25325428IPR003340B3 DNA binding domain
PROSITE profilePS5086314.833325428IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MGTRMAEPVD LDDCQGGGMS SVAKTTIWQS GRDSPDVALR LMCCPTDVKM SATFCSETNA  60
SASTPASQVI GFQDQCARDE TEELTMNRAM KGEHFSEDNQ DDEVGSAMTE ELNSSVMSVS  120
ENERQPKQEA VFFKDWASAK SMENSLRGLE RLGSGMRMVS GSGVELDVFE DLRRHSMWME  180
QAGKLPSSQY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNRE EDAARAYDRA ALKFRGRDAI  240
TNFSPVRDGD PEARFMKEHK KEEIVDMLRK HTYDDEFGHH SKRIMTTGPG DSGLRIHVCQ  300
ENQAAVDGNA NAVSSMRGLA REHLFDKAVT PSDVGKLNRL VIPKQHAEKY FPLDVNSSER  360
GLVLNFEDKM GRVWRFRYSY WSSSQSYVLT KGWSRFVKDK KLEAGDIVSF YRGSTQPHQL  420
YINWRRRPSG QPWLGVGSLS YQSKGSVVYP MKGSSSLNPF NSGTQAAVAY NAQWMPVFCP  480
VKQFDSNSNS RLSQVGQVDT LWSHSPGVLP FSFTSPATKQ MERGSFHDVN PDGLPTMDLY  540
HDVQKSLSAG NRSTAIEPLH QFINPNFPSA GEKTPEHKAT SRLDPATKKG VRLFGVNLAE  600
RHRQVPQHHV QLNLFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-523214284114B3 domain-containing transcription factor NGA1
5os9_B4e-523214284114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QRH41e-114A0A0D6QRH4_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.15e-92RAV family protein