PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_234967g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 212aa MW: 24030.6 Da PI: 7.2496

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_234967g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.2	2e-41	55	154	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++r+kC+k+Cvlapyfp+++p+kf+ vh+lFG+ +v+k+l++lp e+r da++s+vyeA r+rdPv+G+v+vi++lq+++++l+++la MA_234967g0010 55 PCAACKIQRKKCTKKCVLAPYFPQDDPEKFRLVHRLFGNGHVVKILQDLPAEQRGDAVRSMVYEASERIRDPVHGCVRVINDLQKKVAELQSQLA 149 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e MA_234967g0010 150 LTQAE 154 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.303	54	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-40	55	152	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTMFHMISYL ILPQEGFLFA CNSPRKLDLH TATERIVLQM SGVTASKPEG SSRTPCAACK 60 IQRKKCTKKC VLAPYFPQDD PEKFRLVHRL FGNGHVVKIL QDLPAEQRGD AVRSMVYEAS 120 ERIRDPVHGC VRVINDLQKK VAELQSQLAL TQAEVANISQ EHANLLTIIT GSHEPSDPNF 180 YYASPQHSVD TDMNQPVLQY VDHLPLWELF WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-32	51	155	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-32	51	155	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008363479.1	3e-50	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-44	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	B8LQI9	6e-71	B8LQI9_PICSI; Uncharacterized protein
STRING	XP_008358286.1	1e-49	(Malus domestica)
STRING	XP_008363479.1	1e-49	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	9e-47	LOB domain-containing protein 1