PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_23415g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 265aa    MW: 29915.5 Da    PI: 6.8713
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_23415g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.7e-31164221259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYG+K+vk+s++prsYYrC+ ++C+vkk+ver+ +d+ ++++tYeg+Hnhe
  MA_23415g0010 164 EDGYKWRKYGRKVVKSSPHPRSYYRCSENNCSVKKRVERDPSDQGLLITTYEGTHNHE 221
                    8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-32150223IPR003657WRKY domain
SuperFamilySSF1182902.09E-27156223IPR003657WRKY domain
PROSITE profilePS5081130.331158223IPR003657WRKY domain
SMARTSM007741.2E-33163222IPR003657WRKY domain
PfamPF031069.4E-25164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MESWGVIRDN FQSLLENAQS ADRGLDPFNS LLWYNPMAAN ALSAFNQEFN IHPQPPVEGQ  60
KIEKDVWTQF LVEDKGSDKN DKQEMKTECM ANSPAAQSAR SQEDQHSEIC NVEEHLSEVS  120
DGNANKTSVD GDIADSKIIK KRKIKTEKGP RYAFKTRSET DVLEDGYKWR KYGRKVVKSS  180
PHPRSYYRCS ENNCSVKKRV ERDPSDQGLL ITTYEGTHNH ESPSVIYYIG KPIILPQQGS  240
KPAIVLVNAS LCPEPVLKYA AHQAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24153224778Probable WRKY transcription factor 4
2lex_A1e-24153224778Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1034211e-162BT103421.1 Picea glauca clone GQ0251_J23 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6RB883e-85A0A0D6RB88_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-33WRKY DNA-binding protein 50