PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_23242g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 285aa MW: 32125.2 Da PI: 8.4765 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.6 | 3e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed +l ++++++G g W+ +r+ g+ R++ +c++rw +yl MA_23242g0010 14 RGAWTVKEDMILSQYIRLHGDGGWRNLPRKAGLSRCGTSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.5e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l+v+ +++lG++ W++Ia +++ gRt++++k++w++ MA_23242g0010 67 RGNISPDEEDLIVRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.939 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.05E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-11 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.71E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.362 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.47E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence Send to blast |
MGRSPCSSKQ GLNRGAWTVK EDMILSQYIR LHGDGGWRNL PRKAGLSRCG TSCRLRWTNY 60 LRPDIKRGNI SPDEEDLIVR MHRLLGNRWS LIAGRLPGRT DNEIKNYWNT RLNKKLLSVN 120 NSHPKPSVQN LKTSSKSPSP LHNHVLKTTP IKTTVVIYPQ MVRPNRCNGY GGRNCSSDEA 180 LKLCNVNENT NSIVHDDSQH IAFGMANINL LEIEGGNCTS SLWSLEEQRS PHSYYFAEDT 240 ATLADSFLEL NELSSPDTNL LSLNFELEEF YREPATLVSG TIDPV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-22 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT109136 | 0.0 | BT109136.1 Picea glauca clone GQ03205_A18 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287618.1 | 3e-70 | PREDICTED: myb-related protein Hv1 | ||||
Refseq | XP_013458423.1 | 4e-70 | transcription factor MYB8 | ||||
Swissprot | Q9S9K9 | 2e-61 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A167V901 | 1e-113 | A0A167V901_PICAB; Transcription factor MYB30 | ||||
STRING | XP_004287618.1 | 1e-69 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-63 | myb domain protein 3 |