PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_2299g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | SRS | ||||||||
Protein Properties | Length: 365aa MW: 38827.6 Da PI: 7.7376 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 197 | 6e-61 | 174 | 313 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 +CqdCGnqakkdC h+RCRtCCksrgfdC thvkstWvpaa+rrerqq+++ ++++ +kr+r + +a +++ ++ + + MA_2299g0010 174 NTCQDCGNQAKKDCFHMRCRTCCKSRGFDCPTHVKSTWVPAARRRERQQHQEEGTRRN------VPTKRQRPAGIIPDAAPPPHSVA---AQVLTVK 261 68*********************************************99988875544......45666666655555555555543...3456778 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +slP+ev+ +avf+cv+v++++dge+e+aYq++v+igGh+fkG+L+dqGl++ MA_2299g0010 262 ESLPAEVRGQAVFKCVKVTAMEDGEDEYAYQATVKIGGHIFKGVLHDQGLDT 313 89***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.4E-59 | 174 | 312 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.7E-28 | 175 | 217 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 8.7E-28 | 264 | 311 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MDMVKDVISG GGGGASGSRR TSATGGEDQE IQREYICSTS SSSIAARKSR NLNLVPFQGF 60 DGGSYGYPSH GIVSTSDVGM AMGGMVGLGV VGGGLGIGVG AGGNVSIDLA NIYSQRGGVS 120 SLLSAPQATS EEQWKQQQQM LFEDKVMIME KSSENKEDQD DKKKGNLVLG LPSNTCQDCG 180 NQAKKDCFHM RCRTCCKSRG FDCPTHVKST WVPAARRRER QQHQEEGTRR NVPTKRQRPA 240 GIIPDAAPPP HSVAAQVLTV KESLPAEVRG QAVFKCVKVT AMEDGEDEYA YQATVKIGGH 300 IFKGVLHDQG LDTSIGPSSF ADHQLGGRSM ASTSAMVDPA QMYGASSSAF LGEVYLKLMG 360 QNLSH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WY88 | 4e-60 | A0A2R6WY88_MARPO; Uncharacterized protein | ||||
STRING | Aquca_014_00598.1 | 9e-53 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 8e-43 | Lateral root primordium (LRP) protein-related |