PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_2285g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 146aa MW: 15636.5 Da PI: 8.4968 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92.7 | 3.1e-29 | 88 | 144 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY +C+kNhAas+Gg+avDGC Efm+s g++gtaa+++CaAC+CHR+FHR e e+e MA_2285g0010 88 GVRYGDCRKNHAASIGGYAVDGCAEFMAS-GNKGTAAGMNCAACNCHRSFHRNEIENE 144 79**************************9.999********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.3E-27 | 89 | 141 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-20 | 89 | 146 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.2E-24 | 90 | 141 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.413 | 91 | 140 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MPITSTRSLS VSNSTGLQRY RQVKDLATDK FGSVFLHLRK EVPGTRSIQI QPQSIASADQ 60 MGPSKIVQQI EAGSAATAKD EDIASRNGVR YGDCRKNHAA SIGGYAVDGC AEFMASGNKG 120 TAAGMNCAAC NCHRSFHRNE IENETL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT106223 | 1e-148 | BT106223.1 Picea glauca clone GQ02905_E14 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931461.2 | 8e-28 | mini zinc finger protein 2 | ||||
Refseq | XP_020681238.1 | 1e-27 | mini zinc finger protein 1-like | ||||
TrEMBL | A9NSF7 | 3e-67 | A9NSF7_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 3e-27 | mini zinc finger 2 |