PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_22572g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 381aa    MW: 42311.1 Da    PI: 8.6667
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_22572g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.9e-106186227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   ++  C++++rtG C +G +C+F+H+p
  MA_22572g0020 61 GETDCPHYMRTGVCGFGMSCRFNHPP 86
                   6789********************97 PP
2zf-CCCH34.14.5e-11107131327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++C++f +tGtCk+G++Ck++H++
  MA_22572g0020 107 DPECQHFVKTGTCKFGATCKYHHPK 131
                    589********************96 PP
3zf-CCCH32.81.2e-10154177427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    ++C+++ +tG+Ck+G +CkF+H++
  MA_22572g0020 154 KECSHYVKTGQCKFGITCKFHHPQ 177
                    68********************97 PP
4zf-CCCH39.78.3e-13319343327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    +++C+f++rtG+CkyG++Ck++H++
  MA_22572g0020 319 QPECQFYMRTGYCKYGSTCKYHHPR 343
                    799********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-45986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6665987IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-86186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-56386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-46584IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249104132IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8107131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5109131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6149178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901150178IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5152177IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-8154177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4156176IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5316343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868316344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7319345IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10319343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-6322344IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEYYGNSSAM PRFLGSAVDP PPPDWNSQHV AADTGLEDSM WHMNLQSHDV TERGSYPERP  60
GETDCPHYMR TGVCGFGMSC RFNHPPRRNI AAAVARNRGE YPERPGDPEC QHFVKTGTCK  120
FGATCKYHHP KYKPGTSDWP QLNALGYPLR LNEKECSHYV KTGQCKFGIT CKFHHPQPAG  180
PSVAIPGPSS YYPTGHSLSI PSPQPYAGGI TTWPIPRTPL MANTYLQGPS AYVPLMISQG  240
MMPVPGWNPF PAQVGSITSR DVGQQAPGTG LFYGPRYQTD GMNPSMQGPL ASYLSRSTSM  300
GIPSTSTQME HIFPERHGQP ECQFYMRTGY CKYGSTCKYH HPRDRTVPLT SCALSPLGLP  360
LRSVIFFFFF LLSFISLKIL R
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1043380.0BT104338.1 Picea glauca clone GQ02809_C21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812314.11e-126LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_019708401.11e-127zinc finger CCCH domain-containing protein ZFN-like isoform X5
SwissprotQ2R4J41e-117C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D6QVW31e-152A0A0D6QVW3_ARACU; Uncharacterized protein
STRINGXP_008812314.11e-126(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-97C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]