PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_2237g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARF
Protein Properties Length: 789aa    MW: 85857.2 Da    PI: 7.1619
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_2237g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23138239199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f k+lt+sd+++ g +++p+ +ae++       + ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   ++ ++
  MA_2237g0020 138 FAKTLTQSDANNGGGFSVPRYCAETIfpkldysSDPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RSLNG 230
                   89****************************995444444..8999*********************************************..44789 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   el+v+++r+
  MA_2237g0020 231 ELCVGIRRS 239
                   99****997 PP
2Auxin_resp111.39.5e-37317399283
    Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   a+ a+t+++FevvY+Prast+eF+vk++ v +al++k+++GmRfkmafetedss++++ +Gt++ v+++dp++Wp S+Wr+L+
  MA_2237g0020 317 ATLAATGQPFEVVYYPRASTPEFCVKANAVDTALRMKWAAGMRFKMAFETEDSSRISWfMGTISLVQCADPIHWPTSPWRLLQ 399
                   57899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-36129245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-29133248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-21137238No hitNo description
SMARTSM010194.1E-22138240IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816138240IPR003340B3 DNA binding domain
PfamPF023622.4E-21138239IPR003340B3 DNA binding domain
PfamPF065078.5E-32317399IPR010525Auxin response factor
PROSITE profilePS5174517.315703783IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MPVPCTMNGP RITAMDSAHG YGLVMQRGAD DGSPGLDSQL WHACAGGMVQ MPSVNARVYY  60
FPQGQAEHSA MNVEFPASLR AKPAILCRVL NVKFMADTET DEVYARIRLV PIKPNEAAME  120
DCSEEIDNAA ANEKPVSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYS SDPPVQTVLA  180
KDVHGEVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRSLNG ELCVGIRRST  240
RSTGGGDSSA WHLAGQQQQQ GSCMSPYRSS SRWEVKGGDN FSAAFFSGGD KASANGNSNG  300
FARNKGKVST KSVIESATLA ATGQPFEVVY YPRASTPEFC VKANAVDTAL RMKWAAGMRF  360
KMAFETEDSS RISWFMGTIS LVQCADPIHW PTSPWRLLQV TWDEPDLLQN VKRVSPWLVE  420
VVSNVPPIQL SPFALPKKKL RVSQHPEFQF EGHGFMGGLQ MATLTNNVLG QINPWHGLSE  480
NVPAGMQGAR HGHIYGISLS DFHPNKVQSG LSLDSFHQLE QGAPLSTPVS TELNIGCFSQ  540
LERSSVQDNL SCVLTMGNSS QSEQKATKGR SSSSTTKSAS FLLFGKPIHT EQSPKSEQQQ  600
QSGVSSSDGP GLHAVNDSGS PGLTSNSSTD GNPEVVDRLQ RAMTGRSDTS KLSENYGLRL  660
YCGETLDSTV NNGGGNLSWF KDRQVSLPTL ENGSGGKTPE DGILHCKAFL ESEDVGRTLD  720
LSVFSSYEQL HNRLAKMFGI EDSDLSNRVL YKDAAGVGRH TGDQPYGDFM KTVRRLTILS  780
DSSSDNMGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A4e-723342016353Auxin response factor 1
4ldw_A4e-723342016353Auxin response factor 1
4ldw_B4e-723342016353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1085450.0BT108545.1 Picea glauca clone GQ03123_F06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253698.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P1NR350.0A0A2P1NR35_9SPER; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]