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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MA_223267g0010 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | LBD | ||||||||
| Protein Properties | Length: 305aa MW: 33690.1 Da PI: 8.2537 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 81.3 | 1.6e-25 | 37 | 131 | 4 | 93 |
DUF260 4 aCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93
+C+vlr++C+++C+l+ ++ +++q++++ +++k++G+s +++l+++ pe+ r+++++sl+yeA+ r+ +PvyG++g+++++++ +q+ ++
MA_223267g0010 37 GCRVLRKGCSESCILRSCLhwistAEAQANATIFLAKFYGRSGLMNLIRNGPEHLRPAIFRSLLYEACGRMVNPVYGSLGLVWSGNWAECQAGVD 131
8******************9999777889**********************************************************99998766 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 14.169 | 33 | 139 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 1.7E-20 | 37 | 128 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 305 aa Download sequence Send to blast |
CKILCAQRLN TRYNEDELQW LPSPAKGLQR ILHSQDGCRV LRKGCSESCI LRSCLHWIST 60 AEAQANATIF LAKFYGRSGL MNLIRNGPEH LRPAIFRSLL YEACGRMVNP VYGSLGLVWS 120 GNWAECQAGV DSILRGSECQ AGVDSILRGS FRAVPQGNFI SPDCKSIVPT EATAVHELRR 180 SAKARSRLKG VPHAKRKRRE GERVTNSNPI HFSGISDDRG DVTNAVQDAA DNIKFNEERT 240 DKYSMIFSEQ EHDEFVAAGQ AQMEYCHDMC NFKTGKPETA CNPVGLELTL GSRGSNSPAD 300 KLSAV |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP403 | 16 | 99 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G67100.1 | 6e-56 | LOB domain-containing protein 40 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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