PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_22141g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LSD
Protein Properties Length: 186aa    MW: 20179.6 Da    PI: 8.4883
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_22141g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD132.41.5e-105175125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   C+gCrtl+ YP GAp+V+C +C++V
  MA_22141g0010 51 CNGCRTLIVYPQGAPNVCCVVCNAV 75
                   ************************9 PP
2zf-LSD124.44.9e-0890114125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+ rtlL+Y  G +sV+C++C tV
  MA_22141g0010  90 CGNYRTLLMYVHGETSVQCSCCTTV 114
                    8888********************9 PP
3zf-LSD128.42.8e-09128152125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+C t+L YP+G ps++Ca+C  V
  MA_22141g0010 128 CGNCFTTLVYPYGDPSIKCAVCRYV 152
                    **********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.4E-104878IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-95175IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.7E-1087116IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-590114IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-7125155IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-9128152IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEWSTPRINL IQKNNPGDVR PGWGTMPLRM NPYPPQPMPL MPPNVQGHLV CNGCRTLIVY  60
PQGAPNVCCV VCNAVNVVPP PGTKMAQLIC GNYRTLLMYV HGETSVQCSC CTTVNLAMEA  120
NQVAHVNCGN CFTTLVYPYG DPSIKCAVCR YVTSVGQIRN MRMPLSAQRP PTTATTVPSS  180
SLALPT
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0717600.0BT071760.1 Picea sitchensis clone WS0452_N14 unknown mRNA.
GenBankEF0847060.0EF084706.1 Picea sitchensis clone WS02727_J11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002988289.11e-56protein LOL1
RefseqXP_010269986.15e-57PREDICTED: protein LSD1
RefseqXP_010269987.15e-57PREDICTED: protein LSD1
RefseqXP_010269988.15e-57PREDICTED: protein LSD1
SwissprotQ93ZB11e-51LOL1_ARATH; Protein LOL1
TrEMBLA9NTQ62e-89A9NTQ6_PICSI; Uncharacterized protein
STRINGXP_010269986.12e-56(Nelumbo nucifera)
STRINGEFJ107084e-56(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-40lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]