PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_22140g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27249.8 Da PI: 7.0643 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl MA_22140g0010 14 KGVWTKEEDDRLIQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l MA_22140g0010 67 RGSFSEDEDDLILKLHALLGNK-WSLIAGRLP-GRTDNEIKNYWNSHL 112 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.354 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.104 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.43E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRAPCCANG DRNKGVWTKE EDDRLIQYIQ AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGSF SEDEDDLILK LHALLGNKWS LIAGRLPGRT DNEIKNYWNS HLKRKLISMG 120 VDPLTHRPFQ RNSRRDLSLP GNVSEPEIAS SREIAEDFFH SPSGLCGDSE QVSDAASESL 180 ARDEPSNLNL NLELSITWPS IHAAAKEEPI LKSKPGEGDL IDEKGYLCRY EECPLGTRLL 240 LR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-30 | 9 | 116 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF086203 | 0.0 | EF086203.1 Picea sitchensis clone WS02716_N17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431803.1 | 2e-82 | PREDICTED: transcription repressor MYB4-like | ||||
Refseq | XP_010446371.1 | 2e-82 | PREDICTED: transcription repressor MYB4-like | ||||
Swissprot | Q9SZP1 | 7e-82 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A9NXX6 | 1e-175 | A9NXX6_PICSI; Uncharacterized protein | ||||
STRING | XP_010431803.1 | 7e-82 | (Camelina sativa) | ||||
STRING | XP_010446371.1 | 6e-82 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 9e-83 | myb domain protein 4 |