PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_2193g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 613aa    MW: 67866.2 Da    PI: 7.8168
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_2193g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17157206155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MA_2193g0020 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206
                   78*******************......55*************************98 PP
2AP240.28.7e-13249299155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+++GV+++k  grW+A+   +     +k+++lg f+++ +Aa+a+++a+ + +g
  MA_2193g0020 249 SKFRGVTRHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIDAARAYDRAAIRCNG 299
                   79*****999.7******5553..2.26**********99**********98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-9157206IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-16157216IPR016177DNA-binding domain
PROSITE profilePS5103217.609158214IPR001471AP2/ERF domain
CDDcd000183.24E-12158216No hitNo description
Gene3DG3DSA:3.30.730.101.5E-17158215IPR001471AP2/ERF domain
SMARTSM003807.2E-32158220IPR001471AP2/ERF domain
PfamPF008472.2E-8249299IPR001471AP2/ERF domain
CDDcd000181.81E-12249307No hitNo description
SuperFamilySSF541719.81E-16249307IPR016177DNA-binding domain
PROSITE profilePS5103215.158250307IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-15250307IPR001471AP2/ERF domain
SMARTSM003803.8E-29250313IPR001471AP2/ERF domain
PRINTSPR003676.6E-5251262IPR001471AP2/ERF domain
PRINTSPR003676.6E-5289309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MTPGRRILRS DIISSDNKPT SNQDDSGTSN SSVVNTVAVE NGCPDFEASS TCSNMNSHSL  60
KAAKFLESVG SDIARAAHPP GNMMFLANEN SGGNDCVTRQ FFPVEVPEKP PPDTLTRSRW  120
TDVTFCDSPD PSEHQKAVAE TTQPTKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AIKFRGAEAD INFNHSDYEE DMKQMNNLSK EEFVHILRRQ  240
STGFSRGSSK FRGVTRHKCG RWEARMGQFL GKKYIYLGLF DSEIDAARAY DRAAIRCNGA  300
GAVTNFEPGL YQDELIAEGE NGGDDHNLDL SLGMSAPTYS TVPLDEHKRT QFKSNKAESA  360
NYSEVPDWKK TRLLNTRTED CNIQQTQLGQ LFNVSPSSTG EKILSFQQLS NAEGGNNFTF  420
LQPQHQVKCA ISDKGDRQEL INITEYNSVR HSRPSEDKTV NLFSEQAPGW SGIHSRSILN  480
RNVPNNGNYD LQHDRNRRAD GSIVSLLPPE KTPGWAWQLQ AAATSLPAAP VFASAASSGF  540
SPQIISAAVP SHDWLQKAGF HYVDQSIGRT SFTEKPKVAF QEDIPLGIDH LLSLSSGSTT  600
TKFKALGLSR ETK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1182870.0BT118287.1 Picea glauca clone GQ04004_L03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022146223.11e-111ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_023532216.11e-111ethylene-responsive transcription factor RAP2-7-like isoform X1
TrEMBLA0A0K0M7770.0A0A0K0M777_PINTB; AP2L3
STRINGXP_004148250.11e-110(Cucumis sativus)
STRINGXP_004164686.11e-110(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-88AP2 family protein