PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_21538g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 722aa MW: 80566 Da PI: 6.1115

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_21538g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.6e-32	64	118	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFveav++LGG++kAtPk+++ m+v+gLtl+h+kSHLQkYRl MA_21538g0020 64 KPRLRWTSELHERFVEAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRL 118 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.374	61	121	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-30	62	119	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-15	63	119	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	64	119	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	66	117	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-25	174	220	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	2.3E-26	431	477	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MNSFVPNFNS QPDNRNPTAK LTHQTEKMYQ VKKPAMESHS ERPAMLQEIS ISTETGLVLS 60 TDPKPRLRWT SELHERFVEA VTKLGGPDKA TPKAVRTRMG VEGLTLYHLK SHLQKYRLGK 120 QPHKEVNVDT SRDGLSHGGP VAGYGSTACR VSEVQVACNS VPSIIPANMT DTLQITEALR 180 MQMEVQRGLH EQLEVQRHLQ LRIEAQGKYL QSILEKARET LAGYNVGSIG LEATRAELSE 240 LASKVKSECF NSTFSALTFS TMPEIPGLLP ESQIARQQSQ AADCSAYSCL TSNESSEKSP 300 TENLQAGGRK RPRSAYDNKL QFWQDDIRED MSLQELTGEE NLSSPSSRTK DSSIVFHERA 360 TSDIVQAEEN GNRLSDQKGK ECEMNGVLVD PPITRTLAFS SALSLQENSQ MYEATKVYTN 420 QDKTRSKGTL QITEALRMQM EVQRRLHEQL EVQRHLQLRI EAQGKYLQSI LEKARETLAG 480 YNVGSIGLEA TRAELSELAS KVKSECFNST FSALTFSTMP EIPGLLPESQ IARQQSQAAD 540 CSAYSCLTSN ESSEKSPTEN LQAGGRKRPR SAYDNKLQFW QDDIREDMSL QELTGEENLS 600 SPSSRTKDSS IVFHERATSD IVQAEENGNR LSDQKGKECE MNGVLVDPPI TRTLAFSSAL 660 SLQENSQMYE ATKVYTNQDK TRSKGYNKFS KMAQDLDLNS NCDTTVSSKE RGLDLNGYVW 720 SR

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MNSFVPNFNS QPDNRNPTAK LTHQTEKMYQ VKKPAMESHS ERPAMLQEIS ISTETGLVLS  60
TDPKPRLRWT SELHERFVEA VTKLGGPDKA TPKAVRTRMG VEGLTLYHLK SHLQKYRLGK  120
QPHKEVNVDT SRDGLSHGGP VAGYGSTACR VSEVQVACNS VPSIIPANMT DTLQITEALR  180
MQMEVQRGLH EQLEVQRHLQ LRIEAQGKYL QSILEKARET LAGYNVGSIG LEATRAELSE  240
LASKVKSECF NSTFSALTFS TMPEIPGLLP ESQIARQQSQ AADCSAYSCL TSNESSEKSP  300
TENLQAGGRK RPRSAYDNKL QFWQDDIRED MSLQELTGEE NLSSPSSRTK DSSIVFHERA  360
TSDIVQAEEN GNRLSDQKGK ECEMNGVLVD PPITRTLAFS SALSLQENSQ MYEATKVYTN  420
QDKTRSKGTL QITEALRMQM EVQRRLHEQL EVQRHLQLRI EAQGKYLQSI LEKARETLAG  480
YNVGSIGLEA TRAELSELAS KVKSECFNST FSALTFSTMP EIPGLLPESQ IARQQSQAAD  540
CSAYSCLTSN ESSEKSPTEN LQAGGRKRPR SAYDNKLQFW QDDIREDMSL QELTGEENLS  600
SPSSRTKDSS IVFHERATSD IVQAEENGNR LSDQKGKECE MNGVLVDPPI TRTLAFSSAL  660
SLQENSQMYE ATKVYTNQDK TRSKGYNKFS KMAQDLDLNS NCDTTVSSKE RGLDLNGYVW  720
SR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-18	64	120	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-18	64	120	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-18	64	120	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-18	64	120	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-18	64	120	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-18	64	120	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-18	64	120	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-18	64	120	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115025	0.0	BT115025.1 Picea glauca clone GQ03607_I01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264109.1	6e-82	PREDICTED: protein PHR1-LIKE 3-like isoform X1
Swissprot	Q8LAJ7	9e-67	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A3G6JA38	1e-100	A0A3G6JA38_PINTA; Myb family transcription factor PHL2
STRING	XP_010264109.1	2e-81	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	4e-69	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]