PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_21440g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 392aa MW: 43827 Da PI: 4.9234 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.7e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l ++++ +G g W+ +++ g++R++k+c++rw++yl MA_21440g0010 14 RGAWTKKEDMILSEYIRIHGDGGWRNLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 72 | 112 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l MA_21440g0010 72 PDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.909 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.03E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.93E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.319 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-14 | 72 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.61E-12 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MGRSPCCSKE GLNRGAWTKK EDMILSEYIR IHGDGGWRNL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI CPDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLSLNE 120 SQHKTSQNLI SSSKSPFPVQ TRVFKASPFP VQTRVFKATA VKITTAVRHS DIIRPNGYNG 180 DDCSNCTSGK ALKLCDVKET TKSSWRGVPV NDSITNEQSE RIASATTDNL IQTEATNCTS 240 STSNLADQQS PDSDHFAGDA ATLAESLLYL NDLSSPDCNL LPTPSDCSTD FASEELHRGP 300 ASLTEETNGF EDMCCDQSNM PCVNSFTVPD DQEMEEFFNS AQHENWIPEL DCLENSSAQP 360 LSLLLLESED EWEERSISTL LLEDPLQIPQ IP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF677019 | 0.0 | EF677019.1 Picea sitchensis clone WS02760_D04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 0.0 | B8LMJ6_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-55 | myb domain protein 3 |