PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_214063g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 382aa MW: 42976 Da PI: 6.8417 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.8e-19 | 41 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r+r +lg+f ta+eAa a++aa+++l+g MA_214063g0010 41 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAQEAAMAYDAAARRLYG 90 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.86E-21 | 40 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-30 | 41 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 41 | 99 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-12 | 41 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.51 | 41 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-35 | 41 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-10 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-10 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEKRSSPERR FDMRRATKVG TKAWKKGPTR GKGGPENATC EYRGVRQRTW GKWVAEIREP 60 KKRTRLWLGS FATAQEAAMA YDAAARRLYG PDAHLNLPEK YERSLYSPSS QGSHLLAHHA 120 SWYFPRGLLD HSRSRIPVIH PTFSSFSPAC PSAVTQRASC INLNVQPNVH HIHQKLQEMK 180 SRNEVRFPRL SMNDRFFMND QINASSTLLP QDIGQISTDL APRHLSSQEV AAAPQPGINT 240 DQENNSKGSI GSQQVDLREF LEQLGVIQAA SPPPPPPPPP PPAWDDADSE CTSIPISNTF 300 SPLPASSQDM VSFEEPLWDS IEIPLDFMET AFLLQNQYSQ VQVVEDQSFP VSIWDFQDPH 360 QQQQNCTEDH NSPPTNQLVP HS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-16 | 42 | 98 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-16 | 42 | 98 | 6 | 63 | ATERF1 |
3gcc_A | 4e-16 | 42 | 98 | 6 | 63 | ATERF1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 1e-38 | ERF family protein |