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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MA_213558g0010 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | bHLH | ||||||||
| Protein Properties | Length: 336aa MW: 38844.1 Da PI: 6.3942 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 19.8 | 1.5e-06 | 170 | 202 | 5 | 32 |
HHHHHHHHHHHHHHHHHHHHCTSCCC....... CS
HLH 5 hnerErrRRdriNsafeeLrellPkas.....k 32
h ++Er+RR +i++ f+ L +llP++s
MA_213558g0010 170 HMIAERNRRVKIKHYFSLLHSLLPHDSkhrveE 202
7799*********************86444440 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 9.16E-6 | 163 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.2E-4 | 170 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 336 aa Download sequence Send to blast |
MEFKDAWDLE ADFNGSLVLP GVYTTTSNPG MMIQPDGQIA ASRDINADSM CIIDELHLYS 60 TTETSWYSNS SEDMDGFYQL DHGNIFHGHS HPQAPESTTL YRQTAFGSYL RPALSLYVKT 120 GRENSMKRCF KFLKIIDENR RELQRLSHAA NIREQHEFNA PLQNKAAFLH MIAERNRRVK 180 IKHYFSLLHS LLPHDSKHRV EELEQTNRAL AESLRVNISK KKGCTSFDQR LEEQHGTFVY 240 SSDEVVLEQS KKIPNQVDMR INVQIDPLSS PTSLMIVLLE RLRELQLEVV SVESTVQQFY 300 LEAHLLITQK VYCVPNLDFL ALYTERFESV LRYIPI |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT113694 | 0.0 | BT113694.1 Picea glauca clone GQ03417_K22 mRNA sequence. | |||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP11631 | 3 | 7 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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