PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_212937g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 625aa    MW: 67300.5 Da    PI: 6.8865
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_212937g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30341399259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  MA_212937g0010 341 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSVLVTTYEGSHNHP 399
                     7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-33325401IPR003657WRKY domain
SuperFamilySSF1182901.23E-27333401IPR003657WRKY domain
PROSITE profilePS5081129.539335401IPR003657WRKY domain
SMARTSM007741.1E-36340400IPR003657WRKY domain
PfamPF031062.4E-26342399IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MADARRVDRL GGIDLSVKLE ETENEEKLMS LREPENEIKN GVLDFFSEKS SRGLGFEFRP  60
TAGDVAPSVS GLGEGLRLGS RKTENKDEVP SSSKGISLST GLQLLPTNTA SDRSTVEDGM  120
SPVRSPEPSN PEEGEPKSEL MMLQVELNRM NEENQRLRFM LNYISKNYGN LQMHLMSVMQ  180
QQPASEKVEE KFNRSSAKSQ DGVKVDVAPG QRQFLDLVPI SSHGTDSQHS LSSDSRDDVE  240
ETATAKSINN EVLSKKRDLC TANSTDKARS DVRVQQPGDR AASPTALNAQ EKGNPESPDH  300
DSWTANKAQK VTNKCAIDQT EATIRKARVS VRARSEAPMI SDGCQWRKYG QKMAKGNPCP  360
RAYYRCTMAV GCPVRKQVQR CAEDRSVLVT TYEGSHNHPL PPAATAMAST TSAAACMLLS  420
GSXXXSTTSA AACMLLSGST TSNDGGFNSS FMQAAAGSLM SCSPASMATI SASAPFPTVT  480
LDLTQNPNPN MYHRQPSGFP MPLGGFQQLP PSHPPQIFSH SLFNNSKFAP LSGQQFDPPQ  540
QPPPFSGHPM QQQTHMPVPI SQYKGPQSSL MDTVSAITAD PNFTSALAAA ITSIISGQSN  600
NANSIPSQAP PCARADNSAS AKLLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21327403176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1145290.0BT114529.1 Picea glauca clone GQ03516_F03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252466.11e-131PREDICTED: probable WRKY transcription factor 31
TrEMBLA0A0C9QVA30.0A0A0C9QVA3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_6922_2664 transcribed RNA sequence
STRINGXP_010252466.11e-130(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.16e-87WRKY family protein