PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_208967g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 450aa MW: 49129 Da PI: 10.2074 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 136 | 178 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +++a++q+G++ W+tIar ++ gRt++ +k++w++ MA_208967g0010 136 PFTPSEDAAILQAHAQHGNK-WATIARSLP-GRTDNAIKNHWNST 178 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-16 | 127 | 185 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 128 | 182 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.86 | 129 | 183 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-15 | 133 | 181 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-12 | 136 | 179 | No hit | No description |
Pfam | PF00249 | 9.4E-15 | 136 | 178 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MIQWQLTIRE FQQGTSFVGS MLAIGIGRRA LDRLAGATGS FLAYPGRHCR DRKSVNSNIY 60 SMAHLRKKIP KRRGRVVLRS TSMRQFYGIQ AGKVNISCWG QPTTNTCAAH QLFAGRRLLK 120 SMLQAPLLSP QVEHRPFTPS EDAAILQAHA QHGNKWATIA RSLPGRTDNA IKNHWNSTLR 180 RRCRDSDKGI LVHLDDEISS LDAARKRSSD GFSHDGSSAL EDNCCSSWEV DSKRLKRLGE 240 LGAEQGPDVE VELEVSDRSD SNPGRVLYRP VPVASFFGSF GKTVANLQET ASGSVGVDPP 300 TSLSLSPPGL DPAIPSPKPP LQKDFHNNST DNNKIPTPPV VGYMRADEAV ERLSTAVKAT 360 VASMLTPVLS SSPRGFNPSA VSSDLLALMR DMVAKEVHKY MSMVAKEVHK YMSSHQPPGM 420 YTPLSPHPEF LGAAGLVRNV VLGGALHLNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-17 | 128 | 182 | 50 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-17 | 128 | 182 | 50 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 6e-17 | 128 | 182 | 50 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102756 | 0.0 | BT102756.1 Picea glauca clone GQ02014_D18 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A5JYF1 | 0.0 | A5JYF1_PICGL; R2R3-MYB transcription factor MYB7 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-24 | myb domain protein 77 |