PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_20585g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 37814.7 Da PI: 5.1402 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.1e-13 | 154 | 196 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N++++ Lr+++Pk K++ a+iL AveY+k+L MA_20585g0010 154 MAERRRRKKLNDRLFMLRSVVPKV-----SKMDRASILGDAVEYLKEL 196 79*********************6.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-16 | 145 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.377 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-14 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-11 | 153 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.45E-13 | 154 | 200 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-15 | 154 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 5.13E-6 | 265 | 317 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MEMAWTGLLD ESFSSIRAML DGGGGDYDFY STMDANGGTL EALLGPSLMC PDASVLSNVG 60 GSIDTFHDLG CSITTSADTL EGPEGSDDMG LLQRRAGIEP GFHKNGSDEK PNGVVGEREA 120 DAANAANNNN NNGCAKAASV GRGRKNGLPA KNLMAERRRR KKLNDRLFML RSVVPKVSKM 180 DRASILGDAV EYLKELLQRI NDLHAELISS SYNSNSLAPI LPDFTCRMNQ EYQASPLNPE 240 VEPARVEVRT REGKALNIHM FCSKKPGLLL STVRALDGLG LDVKQAVISC LNGFALDVFE 300 AEKSMGKDVT GEEIKALLLH TADQNPWDSH GGICFSKGLL IYKEQAFPSS G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 162 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT122687 | 1e-169 | BT122687.1 Picea sitchensis clone WS0454_C09 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021673395.1 | 5e-77 | transcription factor ICE1-like isoform X1 | ||||
Swissprot | Q9LPW3 | 2e-72 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
STRING | ERN06217 | 3e-76 | (Amborella trichopoda) | ||||
STRING | GSMUA_Achr6P08070_001 | 2e-77 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 1e-74 | bHLH family protein |