PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_20452g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 215aa    MW: 24418.9 Da    PI: 9.9167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_20452g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-07144170531
                    HHHHHHHHHHHHHHHHHHHHCTSCCC. CS
            HLH   5 hnerErrRRdriNsafeeLrellPkas 31 
                    h  +Er+RR+++ + f+ Lr+l+P  +
  MA_20452g0010 144 HVVAERKRREQMSDVFSALRTLVPVKP 170
                    8899********************843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.657139193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.91E-7139170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-5143167No hitNo description
Gene3DG3DSA:4.10.280.105.0E-6143170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-5144170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDPVTNWQTD SFESVDAAYL RSCFPSSSNP VLQCQIDIDN GQPSLQPEES IISVSTEGIH  60
SNWKGLGLSF DMKRNSAFVE WNAIKPNLPR SCRPKKYCSL QKRCIRFLND INNHKIVQPL  120
SYGNNSGNPS MAVRNTYDKL AIHHVVAERK RREQMSDVFS ALRTLVPVKP KIECRKSYSA  180
SSNKRLRDFS EEAYKTVGAK KSRVRSIVMS EVMIT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152ERKRRE