PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_204471g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 301aa MW: 34600.9 Da PI: 7.3867

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_204471g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.5	1.7e-42	20	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrF Pt+eel+ +yLkk +++ + +++ i+++d+y+++Pw+Lp +++ +e++w+fF++r +k+ r+nr t sgyWkatg+d++v + MA_204471g0010 20 LPGFRFYPTEEELLGFYLKKMIQAGHPLIFDNiIPTLDLYQYDPWELPgLAHDVGERQWFFFVPRYHKKC--ARPNRLTVSGYWKATGSDRAVRN 112 69******************99995555544***********657777999****99865..7****************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ + +gl+k+Lvfy+g+ p+g+ktdW+m+eyr+ MA_204471g0010 113 KQLHCIGLRKILVFYEGKGPRGQKTDWIMNEYRI 146 9999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-46	15	168	IPR003441	NAC domain
PROSITE profile	PS51005	50.006	19	168	IPR003441	NAC domain
Pfam	PF02365	8.4E-23	21	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MALPDKICND GSVQGELMIL PGFRFYPTEE ELLGFYLKKM IQAGHPLIFD NIIPTLDLYQ 60 YDPWELPGLA HDVGERQWFF FVPRYHKKCA RPNRLTVSGY WKATGSDRAV RNKQLHCIGL 120 RKILVFYEGK GPRGQKTDWI MNEYRIPDLS TSVAKKKIDM VLCRIYRKAV TQKSMEQRGK 180 AIFVDNEELV FLSDEYEQKS QSITLDVSCQ SNPTTESNVS SFHYLKQEGL CSSLSKTKDE 240 SSLFDCLEPM FSEETMLLST PKAPKPPQLE LPKLSMDFLF SQRIETPYAL LSTPSPFQIP 300 L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-40	16	168	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-40	16	168	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-40	16	168	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-40	16	168	14	165	NO APICAL MERISTEM PROTEIN
3swm_A	8e-40	16	168	17	168	NAC domain-containing protein 19
3swm_B	8e-40	16	168	17	168	NAC domain-containing protein 19
3swm_C	8e-40	16	168	17	168	NAC domain-containing protein 19
3swm_D	8e-40	16	168	17	168	NAC domain-containing protein 19
3swp_A	8e-40	16	168	17	168	NAC domain-containing protein 19
3swp_B	8e-40	16	168	17	168	NAC domain-containing protein 19
3swp_C	8e-40	16	168	17	168	NAC domain-containing protein 19
3swp_D	8e-40	16	168	17	168	NAC domain-containing protein 19
4dul_A	9e-40	16	168	14	165	NAC domain-containing protein 19
4dul_B	9e-40	16	168	14	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT110807	0.0	BT110807.1 Picea glauca clone GQ03228_E18 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	3e-61	NAC domain-containing protein 22-like
Refseq	XP_010943933.2	1e-60	NAC domain-containing protein 22
TrEMBL	A0A075M5N5	1e-128	A0A075M5N5_9SPER; NAC domain protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-55	NAC domain containing protein 36