PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_19934g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 285aa    MW: 31876.2 Da    PI: 8.3062
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_19934g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.21.3e-289106193
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C+l+p++     +++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P++G+vg+++++++ ++q+ 
  MA_19934g0010   9 SCNGCRVLRKGCSESCILRPCLhwistAESQANATIFLAKFYGRAGLTNLISNGPEHLRPAIFRSLLYEACGRMLNPIHGSVGLLWSGNWAVCQKG 104
                    6*********************9999778899*************************************************************987 PP

         DUF260  92 ae 93 
                    +e
  MA_19934g0010 105 VE 106
                    76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2478114IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-239105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
SDHHTMRMSC NGCRVLRKGC SESCILRPCL HWISTAESQA NATIFLAKFY GRAGLTNLIS  60
NGPEHLRPAI FRSLLYEACG RMLNPIHGSV GLLWSGNWAV CQKGVENILR GSFPAVARDS  120
SASHVVPMEA MAFRELHRPV KTRGKVKGLS YSKSRRKVRE RAPVSSHMDS SCKSHDDWGD  180
ITNTLQKAAE NGKFNEKHIE KKSTFLSGQE VDEFIAADQA QMKYCHDLGN LKTSQTEVES  240
PCNSVGLELT LGSQEYFPRT PDKSLAFDLR CSEAFWDQCM ENYLP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1009871e-112BT100987.1 Picea glauca clone GQ0062_D21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLH9M9S33e-72H9M9S3_PINRA; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-62LOB domain-containing protein 40