PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_196775g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25942.4 Da PI: 7.9088 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.9 | 2.7e-06 | 69 | 91 | 10 | 31 |
HHHHHHHHHHHHHHHCTSCC.C. CS HLH 10 rrRRdriNsafeeLrellPk.as 31 r+RR+++N+a+ +Lr+++Pk + MA_196775g0010 69 RKRRKKLNDALYTLRSVVPKiNK 91 9******************9664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.76E-6 | 64 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-4 | 69 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDTRLQYAGE ILKSDYYVDQ NNQLWMDNMD EIVAHLDWDG NDLEIMGVSK PAAKTNHLQS 60 ASKNLHSQRK RRKKLNDALY TLRSVVPKIN KVCINSSSLN VIKPMRNPNL EKRSTGSGDA 120 NKSVDNFKHE KVLEGKIVEI FNTGKDGTYH VRIECKKDAG VLVDLTRALE SFPWEIVNSN 180 TCCFHEAIQY TLYVRSLENV GADKLEDMIR RTMTCDYSGE IHSKISAS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF083683 | 1e-117 | EF083683.1 Picea sitchensis clone WS02910_B06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LPT7 | 1e-111 | B8LPT7_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29930.2 | 4e-11 | bHLH family protein |