PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_19573g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 475aa    MW: 53003.8 Da    PI: 6.1413
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_19573g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.48.5e-34571991128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 
                    lp+G++F+Ptd+el+ e+L++kve +       ++++   ++   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          +
  MA_19573g0010  57 LPAGVKFDPTDQELL-EHLEAKVEINGhkphplIDEFIPtLEGEdGICYTHPEKLP-GVTRDGLNRHFFHRPSKAYTTGTRKRRKiqsecdlqGGE 150
                    799************.99****998875565442222222444436**********.555667799******************845555544337 PP

            NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v + +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  MA_19573g0010 151 TRWHKTGKTRPVSV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 199
                    78***********9.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3751218IPR003441NAC domain
PROSITE profilePS5100532.23657218IPR003441NAC domain
PfamPF023651.5E-1558199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MADPMVNLSG KERSNATNSS SLIDAKLEEQ QISGSKVCPS CGHKFEFKEG IQDWPGLPAG  60
VKFDPTDQEL LEHLEAKVEI NGHKPHPLID EFIPTLEGED GICYTHPEKL PGVTRDGLNR  120
HFFHRPSKAY TTGTRKRRKI QSECDLQGGE TRWHKTGKTR PVSVNGKQKG CKKILVLYTN  180
FGKHRKPEKT NWVMHQYHLG LQEEEKEGEL VVSKVFYQTQ PRQCNWERAT SDITGSVITR  240
NQSHEMTPTQ PGDGSFKTYP AAAMVEKSMT DINPGPSCAY NVDGLQQANA DQFPFASCPR  300
SFDEGISDST GKGSESSHCT PHSCDEHEEH EHDPQNALND ALKRGFPMPA GRREIIAWRF  360
DKRSDSVNVD LKSSGHYRAQ SSNADMTCRA GESQEPDQDG DLAAVGEILS RPQVQEKLQN  420
VAGKSSSQKL SFEDIFMEST GIKEGAALTN SQDTDWIKYS SFWTESDSPE NSRMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-125719915140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1077630.0BT107763.1 Picea glauca clone GQ03112_H13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069993.11e-143NAC domain-containing protein 75-like
RefseqXP_027069994.11e-143NAC domain-containing protein 75-like
RefseqXP_027069995.11e-143NAC domain-containing protein 75-like
RefseqXP_027069996.11e-143NAC domain-containing protein 75-like
RefseqXP_027176602.11e-143NAC domain-containing protein 75
TrEMBLA0A2U1MT061e-142A0A2U1MT06_ARTAN; NAC domain-containing protein
STRINGPOPTR_0018s06790.11e-137(Populus trichocarpa)
STRINGXP_004513071.11e-137(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-119NAC domain containing protein 75