PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_19573g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 475aa MW: 53003.8 Da PI: 6.1413 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.4 | 8.5e-34 | 57 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 lp+G++F+Ptd+el+ e+L++kve + ++++ ++ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ + MA_19573g0010 57 LPAGVKFDPTDQELL-EHLEAKVEINGhkphplIDEFIPtLEGEdGICYTHPEKLP-GVTRDGLNRHFFHRPSKAYTTGTRKRRKiqsecdlqGGE 150 799************.99****998875565442222222444436**********.555667799******************845555544337 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v + +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l MA_19573g0010 151 TRWHKTGKTRPVSV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 199 78***********9.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-37 | 51 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.236 | 57 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-15 | 58 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MADPMVNLSG KERSNATNSS SLIDAKLEEQ QISGSKVCPS CGHKFEFKEG IQDWPGLPAG 60 VKFDPTDQEL LEHLEAKVEI NGHKPHPLID EFIPTLEGED GICYTHPEKL PGVTRDGLNR 120 HFFHRPSKAY TTGTRKRRKI QSECDLQGGE TRWHKTGKTR PVSVNGKQKG CKKILVLYTN 180 FGKHRKPEKT NWVMHQYHLG LQEEEKEGEL VVSKVFYQTQ PRQCNWERAT SDITGSVITR 240 NQSHEMTPTQ PGDGSFKTYP AAAMVEKSMT DINPGPSCAY NVDGLQQANA DQFPFASCPR 300 SFDEGISDST GKGSESSHCT PHSCDEHEEH EHDPQNALND ALKRGFPMPA GRREIIAWRF 360 DKRSDSVNVD LKSSGHYRAQ SSNADMTCRA GESQEPDQDG DLAAVGEILS RPQVQEKLQN 420 VAGKSSSQKL SFEDIFMEST GIKEGAALTN SQDTDWIKYS SFWTESDSPE NSRMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-12 | 57 | 199 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107763 | 0.0 | BT107763.1 Picea glauca clone GQ03112_H13 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027069993.1 | 1e-143 | NAC domain-containing protein 75-like | ||||
Refseq | XP_027069994.1 | 1e-143 | NAC domain-containing protein 75-like | ||||
Refseq | XP_027069995.1 | 1e-143 | NAC domain-containing protein 75-like | ||||
Refseq | XP_027069996.1 | 1e-143 | NAC domain-containing protein 75-like | ||||
Refseq | XP_027176602.1 | 1e-143 | NAC domain-containing protein 75 | ||||
TrEMBL | A0A2U1MT06 | 1e-142 | A0A2U1MT06_ARTAN; NAC domain-containing protein | ||||
STRING | POPTR_0018s06790.1 | 1e-137 | (Populus trichocarpa) | ||||
STRING | XP_004513071.1 | 1e-137 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-119 | NAC domain containing protein 75 |