PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_19532g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 474aa    MW: 52032.1 Da    PI: 4.9488
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_19532g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-1998147356
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a ++k++g+
  MA_19532g0010  98 YRGIRQRP-WGKWAAEIRDPRK---GMRVWLGTFNTAEEAARAYDAEARKIRGN 147
                    9*******.**********954...39************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-2297155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-3197155IPR001471AP2/ERF domain
SMARTSM003802.2E-3597160IPR001471AP2/ERF domain
PROSITE profilePS5103223.60497154IPR001471AP2/ERF domain
CDDcd000182.76E-3298156No hitNo description
PfamPF008478.2E-1298146IPR001471AP2/ERF domain
PRINTSPR003672.0E-1198109IPR001471AP2/ERF domain
PRINTSPR003672.0E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MCGGTVISNS GPISKSERVT VEDLWAGLHG VRGPFQESFF GLDSLDDEDD YLDILALFED  60
KSAARKECTS AGGGLATYPS QCKGVAKVTR GRKRKTMYRG IRQRPWGKWA AEIRDPRKGM  120
RVWLGTFNTA EEAARAYDAE ARKIRGNKAK VNFADDLPSP KKSKSKKVVK KLVGSSDIVQ  180
GQKSNPEATT SFLNEAQSFD FNLNEAQRFL QFDSPLPKKS KKVVKKLVGS SDIVQGQKSN  240
LEATTSFLNE AQHFYFNLNE AQRSLPFDSP LQSSSGESSI PTDMHISSVQ TLPVPFYDQV  300
QNINTNNLQM VMLPSQKVAS KVQPLENYTE SWNLNSDSCI YFDDSCSPQG VDDAKSPKTS  360
SALSNTIEGD GANFMDVPVQ LIMGISEGSH QDGSSLLDSK VIKPQTSHET LDSNSIEELV  420
VDSCLALLQF LDFEGGTDQS TQPVDINGTY FPENVNFPAI FNFDGDMPMS GATQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2198153359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1072170.0BT107217.1 Picea glauca clone GQ03104_J01 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-30ethylene-responsive element binding protein