PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_19532g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 474aa MW: 52032.1 Da PI: 4.9488 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.2e-19 | 98 | 147 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a ++k++g+ MA_19532g0010 98 YRGIRQRP-WGKWAAEIRDPRK---GMRVWLGTFNTAEEAARAYDAEARKIRGN 147 9*******.**********954...39************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-22 | 97 | 155 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-31 | 97 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-35 | 97 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.604 | 97 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.76E-32 | 98 | 156 | No hit | No description |
Pfam | PF00847 | 8.2E-12 | 98 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MCGGTVISNS GPISKSERVT VEDLWAGLHG VRGPFQESFF GLDSLDDEDD YLDILALFED 60 KSAARKECTS AGGGLATYPS QCKGVAKVTR GRKRKTMYRG IRQRPWGKWA AEIRDPRKGM 120 RVWLGTFNTA EEAARAYDAE ARKIRGNKAK VNFADDLPSP KKSKSKKVVK KLVGSSDIVQ 180 GQKSNPEATT SFLNEAQSFD FNLNEAQRFL QFDSPLPKKS KKVVKKLVGS SDIVQGQKSN 240 LEATTSFLNE AQHFYFNLNE AQRSLPFDSP LQSSSGESSI PTDMHISSVQ TLPVPFYDQV 300 QNINTNNLQM VMLPSQKVAS KVQPLENYTE SWNLNSDSCI YFDDSCSPQG VDDAKSPKTS 360 SALSNTIEGD GANFMDVPVQ LIMGISEGSH QDGSSLLDSK VIKPQTSHET LDSNSIEELV 420 VDSCLALLQF LDFEGGTDQS TQPVDINGTY FPENVNFPAI FNFDGDMPMS GATQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 98 | 153 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107217 | 0.0 | BT107217.1 Picea glauca clone GQ03104_J01 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 7e-30 | ethylene-responsive element binding protein |