PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_19520g0020
Common NameHB-3
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 822aa    MW: 89658 Da    PI: 6.1092
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_19520g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-181876357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  MA_19520g0020 18 KYVRYTSEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                   6789*****************************************************97 PP
2START163.81.2e-511443522205
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++  ++l +  +g  g+++l +
  MA_19520g0020 144 IAEETLAEFLSKAKGAAVDWVQMPGMKPGPDSIGIVAISNTCNGVAARACGLVGLDPT-KVAEILKDRPSWLRDCRCLDVLTAFPTGngGTIELLY 238
                    7899******************************************************.8888888888*****************999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++++a ++l++ Rdf+++Ry+  l++g++v++++S++ +q  p+    +++vRae+lpSg+li+p+++g+s + +v+h+dl+ ++++++lr+l++s
  MA_19520g0020 239 MQTYAATTLASaRDFWTLRYTTVLEDGSLVVCERSLSGTQGGPSippVQHFVRAEMLPSGYLIQPCEGGGSIIRIVDHMDLEPWSVPEVLRPLYES 334
                    ********9999*****************************99999999*********************************************** PP

                    HHHHHHHHHHHHTXXXXX CS
          START 188 glaegaktwvatlqrqce 205
                    +++ ++k++ a+l+r+++
  MA_19520g0020 335 STVLAQKMTIAALRRLRQ 352
                    *************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-18676IPR009057Homeodomain-like
PROSITE profilePS5007115.7751377IPR001356Homeobox domain
SMARTSM003891.1E-141581IPR001356Homeobox domain
SuperFamilySSF466895.13E-161880IPR009057Homeodomain-like
CDDcd000867.92E-161878No hitNo description
PfamPF000467.4E-161876IPR001356Homeobox domain
PROSITE profilePS5084825.731134349IPR002913START domain
CDDcd088753.02E-74138354No hitNo description
SuperFamilySSF559614.94E-36143355No hitNo description
SMARTSM002342.1E-37143353IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-23144349IPR023393START-like domain
PfamPF018523.7E-49144352IPR002913START domain
PfamPF086704.4E-47679821IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MAVMANNKDA KNSMDTSKYV RYTSEQVEAL ERVYSECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTKQVSQ LVYENGYMRQ QLQNASVAAT DTSCESVVTS  120
GQHQHNPTPQ HPPRDASPAG LLSIAEETLA EFLSKAKGAA VDWVQMPGMK PGPDSIGIVA  180
ISNTCNGVAA RACGLVGLDP TKVAEILKDR PSWLRDCRCL DVLTAFPTGN GGTIELLYMQ  240
TYAATTLASA RDFWTLRYTT VLEDGSLVVC ERSLSGTQGG PSIPPVQHFV RAEMLPSGYL  300
IQPCEGGGSI IRIVDHMDLE PWSVPEVLRP LYESSTVLAQ KMTIAALRRL RQIAQEATGE  360
VVFGWGRQPA VLRTFSQRLS RGFNEAVNGF TDDGWSLLGS DGVEDVTIAI NSSPNKHFAS  420
QVNASNGLTT LGGGILCAKA SMLLQNVPPA LLVRFLREHR SEWADSNIDA YSAAALKASP  480
YSVPGSRAGG FSGSQVILPL AHTVEHEEFL EVIKLEGHGL TQEEAVLSRD MFLLQLCSGI  540
DENAAGACAE LVFAPIDESF ADDAPLLPSG FRVIPLESRT DGSGGPNRTL DLASALEVGS  600
AGTRTSGDSG ANSNLRSVLT IAFQFTYESH LRENVAAMAR QYVRSVVASV QRVAMALAPS  660
RLSAHVGPRP PPGTPEALTL ARWICQSYRL HIGVDLFRAD CEASESVLKL LWHHSDAIMC  720
CSVKSLPVFT FANQAGLDML ETTLVALQDI SLDKILDENG RKSFFTDYGQ IIQQGYAYLP  780
AGICLSSMGR PASYDRAIAW KVLNDEDSTH CIVFMFMNWS FM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3919140.0HQ391914.1 Picea glauca class III homeodomain leucine zipper protein (HB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247499.10.0PREDICTED: homeobox-leucine zipper protein HOX32-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0QSS20.0Q0QSS2_PICGL; Homeodomain-leucine zipper trancription factor HB-3
TrEMBLQ0QUA80.0Q0QUA8_PICMA; Homeodomain-leucine zipper trancription factor HB-3
TrEMBLQ0QUG00.0Q0QUG0_PICAB; Homeodomain-leucine zipper trancription factor HB-3
STRINGXP_010247498.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Namroud MC,Guillet-Claude C,Mackay J,Isabel N,Bousquet J
    Molecular evolution of regulatory genes in spruces from different species and continents: heterogeneous patterns of linkage disequilibrium and selection but correlated recent demographic changes.
    J. Mol. Evol., 2010. 70(4): p. 371-86
    [PMID:20354847]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]