PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_1948g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 636aa    MW: 70357.9 Da    PI: 4.4154
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_1948g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.22.2e-55301581129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lppGfrFhPtdeel+v+yLk++v g++l+l ++i+evdiyk+ePwdLp k ++++++ ewyfFs++d+ky++g+r+nrat  gyWkatgkd++++s 
  MA_1948g0010  30 LPPGFRFHPTDEELIVYYLKRRVCGRSLKL-DAIAEVDIYKCEPWDLPeKsHLQSRDLEWYFFSPKDRKYPNGSRTNRATGIGYWKATGKDRTITS- 124
                   79****************************.99**************94346666777**************************************. PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   ++++vg+kktLvfy+grap+g++t+Wv+heyrle
  MA_1948g0010 125 NSRTVGMKKTLVFYTGRAPSGVRTNWVIHEYRLE 158
                   999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-6523180IPR003441NAC domain
PROSITE profilePS5100561.49330180IPR003441NAC domain
PfamPF023652.8E-2731157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MVAESLAQRR KGGGGIRRSG SFASKKRVSL PPGFRFHPTD EELIVYYLKR RVCGRSLKLD  60
AIAEVDIYKC EPWDLPEKSH LQSRDLEWYF FSPKDRKYPN GSRTNRATGI GYWKATGKDR  120
TITSNSRTVG MKKTLVFYTG RAPSGVRTNW VIHEYRLEDN ELRHSDVVQD SYVLCRLFEK  180
SGPGPKNGEQ YGAPFREEDW NEHTNEDGFT LPTVTDASPL AIQFSGGNFD EDNEDISSKQ  240
DPVVEDSFVP DQLPFFLDQQ FVSSGDSISP DDNDELNRLL LECLAGPETS SMLQLYHFDD  300
IQKQDDIIPN ESSMCTKMQK EGTEFLSEPE DISLLFNGQH ARAVISQGDG FSLLQQGNME  360
NKEQMIDSFL QDIPASSSSL LEGDFLELND FQSELEANTS GIGSFDELNE FFDASDNLHG  420
FYDASMMLNE ICNPIEGITM GYAENYQYGV LPEASNVYVE PDLAQVGDNL ASQFCTEGQM  480
MDVNGNFFAS GEVNDAGILV PPIGGSEYTT VTQHMNAAML RQQDHNESPP SSLSRFINIL  540
GSIDSLPASA AEYPSKKGSL SKQPSFGSIH LRAANAHLTA VTVTCTCSNN LEHKKGDATG  600
SCTCSSDVSY GMMKGSLLAN RSHISSGVAS DAWSYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-60151802168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1028560.0BT102856.1 Picea glauca clone GQ0201_L21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482EQA90.0A0A482EQA9_9SPER; NAC transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-87NAC domain containing protein 2