PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_19488g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 154aa MW: 17761.9 Da PI: 5.3173 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.9 | 1.3e-29 | 32 | 125 | 2 | 95 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrF Pt+eelv +yLkk veg + l+++ +i+++d+y+++Pw+Lp + +a+e++w+fF++rd+k+ r+nr tksgyWkatg+d++v ++ MA_19488g0020 32 IPGFRFYPTEEELVGFYLKKCVEGGHrLNFDIIIPTLDLYQHDPWELPgLANDAKESQWFFFVPRDNKKC--PRPNRLTKSGYWKATGSDRAVRNE 125 69*********************9995666666***************556566888*********9975..6********************884 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.317 | 31 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.62E-29 | 32 | 132 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-15 | 33 | 120 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MEEMYGDGEI LGESTVIPGF RFYPTEEEST VIPGFRFYPT EEELVGFYLK KCVEGGHRLN 60 FDIIIPTLDL YQHDPWELPG LANDAKESQW FFFVPRDNKK CPRPNRLTKS GYWKATGSDR 120 AVRNELLLEG HRFRQSSSQR AASVHRSEEN SGVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-21 | 33 | 125 | 19 | 110 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-21 | 33 | 125 | 19 | 110 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-21 | 33 | 125 | 19 | 110 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-21 | 33 | 125 | 19 | 110 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-21 | 33 | 125 | 22 | 113 | NAC domain-containing protein 19 |
3swm_B | 8e-21 | 33 | 125 | 22 | 113 | NAC domain-containing protein 19 |
3swm_C | 8e-21 | 33 | 125 | 22 | 113 | NAC domain-containing protein 19 |
3swm_D | 8e-21 | 33 | 125 | 22 | 113 | NAC domain-containing protein 19 |
3swp_A | 8e-21 | 33 | 125 | 22 | 113 | NAC domain-containing protein 19 |
3swp_B | 8e-21 | 33 | 125 | 22 | 113 | NAC domain-containing protein 19 |
3swp_C | 8e-21 | 33 | 125 | 22 | 113 | NAC domain-containing protein 19 |
3swp_D | 8e-21 | 33 | 125 | 22 | 113 | NAC domain-containing protein 19 |
4dul_A | 7e-21 | 33 | 125 | 19 | 110 | NAC domain-containing protein 19 |
4dul_B | 7e-21 | 33 | 125 | 19 | 110 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006828987.1 | 1e-32 | NAC domain-containing protein 35 | ||||
Refseq | XP_009420148.1 | 4e-32 | PREDICTED: NAC domain-containing protein 35-like isoform X1 | ||||
Refseq | XP_020598401.1 | 7e-33 | NAC domain-containing protein 35-like, partial | ||||
Refseq | XP_026406348.1 | 4e-32 | NAC domain-containing protein 35-like | ||||
Refseq | XP_028555611.1 | 6e-33 | NAC domain-containing protein 35 isoform X2 | ||||
Swissprot | Q10S65 | 9e-31 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
Swissprot | Q9ZVP8 | 1e-30 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A075M5N5 | 4e-44 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | ERM96403 | 5e-32 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-32 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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