PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_19310g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GRAS | ||||||||
Protein Properties | Length: 590aa MW: 66128.1 Da PI: 4.7653 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 195.9 | 2.6e-60 | 245 | 449 | 2 | 217 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + L++cAea+s+g++ l+ +++++l+e +sp gdp+qR+ +y+ e L+++ ++ ++ +e e++s e a+++f+++ P++kf h+t MA_19310g0010 245 LQILVKCAEALSEGHHGLVGSMVSKLQEFSSPFGDPLQRISFYVSEVLKKHSFS-------VVNQEEIYEESSLEYDLAYQAFYQLLPYHKFLHFT 333 689***********************************************9998.......45666666666999999****************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 NqaIleav++++ +HiiD++i qG+QWp+++q+La Rp+gpp l+iT++g+ ++++l++tg+rL +fAe++++ f f + ++ +le+l+ + MA_19310g0010 334 SNQAILEAVDNASNIHIIDLEIRQGFQWPSFIQSLALRPGGPPkLLKITAIGQ----DEKRLKQTGRRLLEFAESMEIAFAFYP-IVVDLENLDES 424 ***************************************9998689*******....9**************************.6888******* PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldes 217 +L+++ +E++aVn+++ l +ll +s MA_19310g0010 425 ALNIEAHETIAVNCSVVLNKLLCQS 449 *******************999665 PP | |||||||
2 | GRAS | 84.7 | 1.5e-26 | 461 | 589 | 245 | 374 |
GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 e++ + +s + rfl++l ++ a+f s+ea ++r + +ri +Er++++++i+nv+ + + + r +Wr+ l+++GFk pls++ +qa+ll MA_19310g0010 461 ESNQSMPSTVGRFLQCLIFHRAVFSSIEAIIGRSNPDRILIERVYVAPNISNVLVNDQGN-SLRYACIDSWRKFLRHSGFKDSPLSNYSKCQANLL 555 56667778899********************************************99998.89********************************* PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l ++++d ++++++ s++l W+d p+vsvSaW+ MA_19310g0010 556 LGMYSNDSFKLHQDGVSITLAWQDTPIVSVSAWT 589 *********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.424 | 218 | 569 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.0E-58 | 245 | 449 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.3E-24 | 461 | 589 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MSTISYNSHA SSFQFYQNPS SEWLHHNKAM DIQAHHQHQQ FLFWEPTPLL PANHKLNPFT 60 ASLPTAPESI ELVRSDAEYT SLWDSGQIDQ KRHISALILR ASERDCLENK VEFCDNVSMS 120 TVTEEKYVLD GXXMSTVTEE KYVLDGLYQG FDAEGGIVPS KAFGELPIPF FDDGIDEISF 180 LGNTQNPCSP SDHSEAVGSI GSCSSASLNS IDKFGNEFIL REEYPSEFEA VLGLQVPPLG 240 QKDLLQILVK CAEALSEGHH GLVGSMVSKL QEFSSPFGDP LQRISFYVSE VLKKHSFSVV 300 NQEEIYEESS LEYDLAYQAF YQLLPYHKFL HFTSNQAILE AVDNASNIHI IDLEIRQGFQ 360 WPSFIQSLAL RPGGPPKLLK ITAIGQDEKR LKQTGRRLLE FAESMEIAFA FYPIVVDLEN 420 LDESALNIEA HETIAVNCSV VLNKLLCQSE HAFYCGPIPA ESNQSMPSTV GRFLQCLIFH 480 RAVFSSIEAI IGRSNPDRIL IERVYVAPNI SNVLVNDQGN SLRYACIDSW RKFLRHSGFK 540 DSPLSNYSKC QANLLLGMYS NDSFKLHQDG VSITLAWQDT PIVSVSAWTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-55 | 250 | 589 | 25 | 379 | Protein SCARECROW |
5b3h_A | 2e-55 | 250 | 589 | 24 | 378 | Protein SCARECROW |
5b3h_D | 2e-55 | 250 | 589 | 24 | 378 | Protein SCARECROW |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101813 | 0.0 | BT101813.1 Picea glauca clone GQ01313_O16 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP13653 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 7e-55 | GRAS family protein |