PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_19310g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 590aa    MW: 66128.1 Da    PI: 4.7653
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_19310g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS195.92.6e-602454492217
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + L++cAea+s+g++ l+ +++++l+e +sp gdp+qR+ +y+ e L+++ ++        ++ +e  e++s e   a+++f+++ P++kf h+t
  MA_19310g0010 245 LQILVKCAEALSEGHHGLVGSMVSKLQEFSSPFGDPLQRISFYVSEVLKKHSFS-------VVNQEEIYEESSLEYDLAYQAFYQLLPYHKFLHFT 333
                    689***********************************************9998.......45666666666999999****************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     NqaIleav++++ +HiiD++i qG+QWp+++q+La Rp+gpp  l+iT++g+    ++++l++tg+rL +fAe++++ f f + ++ +le+l+ +
  MA_19310g0010 334 SNQAILEAVDNASNIHIIDLEIRQGFQWPSFIQSLALRPGGPPkLLKITAIGQ----DEKRLKQTGRRLLEFAESMEIAFAFYP-IVVDLENLDES 424
                    ***************************************9998689*******....9**************************.6888******* PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldes 217
                    +L+++ +E++aVn+++ l +ll +s
  MA_19310g0010 425 ALNIEAHETIAVNCSVVLNKLLCQS 449
                    *******************999665 PP

2GRAS84.71.5e-26461589245374
           GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                    e++ + +s + rfl++l ++ a+f s+ea ++r + +ri +Er++++++i+nv+ + + +   r     +Wr+ l+++GFk  pls++  +qa+ll
  MA_19310g0010 461 ESNQSMPSTVGRFLQCLIFHRAVFSSIEAIIGRSNPDRILIERVYVAPNISNVLVNDQGN-SLRYACIDSWRKFLRHSGFKDSPLSNYSKCQANLL 555
                    56667778899********************************************99998.89********************************* PP

           GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    l ++++d ++++++  s++l W+d p+vsvSaW+
  MA_19310g0010 556 LGMYSNDSFKLHQDGVSITLAWQDTPIVSVSAWT 589
                    *********************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.424218569IPR005202Transcription factor GRAS
PfamPF035149.0E-58245449IPR005202Transcription factor GRAS
PfamPF035145.3E-24461589IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MSTISYNSHA SSFQFYQNPS SEWLHHNKAM DIQAHHQHQQ FLFWEPTPLL PANHKLNPFT  60
ASLPTAPESI ELVRSDAEYT SLWDSGQIDQ KRHISALILR ASERDCLENK VEFCDNVSMS  120
TVTEEKYVLD GXXMSTVTEE KYVLDGLYQG FDAEGGIVPS KAFGELPIPF FDDGIDEISF  180
LGNTQNPCSP SDHSEAVGSI GSCSSASLNS IDKFGNEFIL REEYPSEFEA VLGLQVPPLG  240
QKDLLQILVK CAEALSEGHH GLVGSMVSKL QEFSSPFGDP LQRISFYVSE VLKKHSFSVV  300
NQEEIYEESS LEYDLAYQAF YQLLPYHKFL HFTSNQAILE AVDNASNIHI IDLEIRQGFQ  360
WPSFIQSLAL RPGGPPKLLK ITAIGQDEKR LKQTGRRLLE FAESMEIAFA FYPIVVDLEN  420
LDESALNIEA HETIAVNCSV VLNKLLCQSE HAFYCGPIPA ESNQSMPSTV GRFLQCLIFH  480
RAVFSSIEAI IGRSNPDRIL IERVYVAPNI SNVLVNDQGN SLRYACIDSW RKFLRHSGFK  540
DSPLSNYSKC QANLLLGMYS NDSFKLHQDG VSITLAWQDT PIVSVSAWTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5525058925379Protein SCARECROW
5b3h_A2e-5525058924378Protein SCARECROW
5b3h_D2e-5525058924378Protein SCARECROW
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1018130.0BT101813.1 Picea glauca clone GQ01313_O16 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1365325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.17e-55GRAS family protein