PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_18975g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 369aa MW: 42169.1 Da PI: 4.6845 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.5 | 2.1e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP+deelv +yLk+kv+g+k+el ++i+evd+yk+ePwdLp k + +++ ewyfFs+rdkky++g+r+nrat++gyWkatgkd++v s MA_18975g0010 6 LPPGFRFHPSDEELVGYYLKRKVHGRKIEL-DIIPEVDLYKCEPWDLPdKsFLPNRDLEWYFFSPRDKKYPNGTRTNRATEAGYWKATGKDRKVSS 100 79****************************.99**************95434455677*************************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++g+kktLvfy+grap+g++tdWvmheyrl MA_18975g0010 101 -KSSVIGTKKTLVFYRGRAPQGRRTDWVMHEYRL 133 .9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-65 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.889 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MAPVSLPPGF RFHPSDEELV GYYLKRKVHG RKIELDIIPE VDLYKCEPWD LPDKSFLPNR 60 DLEWYFFSPR DKKYPNGTRT NRATEAGYWK ATGKDRKVSS KSSVIGTKKT LVFYRGRAPQ 120 GRRTDWVMHE YRLDETQCEG AAGVQDAFVL CRVFKKNGIE PRIECWNEPP IQTNALPSVM 180 TNSFSDKNTN LGAVEDMSDK DYPQVKREEA DIQADPTLQS ETSFERLNDR TDNSASLNQW 240 LEFLLDDSNP SYILTSPANA RNDLKVSSML GGARLEQESL LPMFKIDNFS QGLADLSFNQ 300 STYQIEPVLS HRMDVCFEEE DVLDEILNVA QASQDENTHT EHSFFMAKLS GNLVGDSLQF 360 DNTYNLWGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-56 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-56 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-56 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-56 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-56 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-56 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-56 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-56 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-56 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-56 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-56 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-56 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-56 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-56 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028066844.1 | 1e-108 | NAC domain-containing protein 45 isoform X2 | ||||
Swissprot | A4VCM0 | 2e-89 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | A0A2I4GR40 | 1e-105 | A0A2I4GR40_JUGRE; NAC domain-containing protein 45-like isoform X1 | ||||
STRING | XP_009367106.1 | 1e-103 | (Pyrus x bretschneideri) | ||||
STRING | XP_009367117.1 | 1e-103 | (Pyrus x bretschneideri) | ||||
STRING | XP_010105605.1 | 1e-104 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 7e-97 | NAC domain containing protein 28 |
Publications ? help Back to Top | |||
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