PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_18975g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 369aa    MW: 42169.1 Da    PI: 4.6845
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_18975g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.52.1e-5661331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhP+deelv +yLk+kv+g+k+el ++i+evd+yk+ePwdLp k  + +++ ewyfFs+rdkky++g+r+nrat++gyWkatgkd++v s
  MA_18975g0010   6 LPPGFRFHPSDEELVGYYLKRKVHGRKIEL-DIIPEVDLYKCEPWDLPdKsFLPNRDLEWYFFSPRDKKYPNGTRTNRATEAGYWKATGKDRKVSS 100
                    79****************************.99**************95434455677*************************************9 PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     k++++g+kktLvfy+grap+g++tdWvmheyrl
  MA_18975g0010 101 -KSSVIGTKKTLVFYRGRAPQGRRTDWVMHEYRL 133
                    .9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-654156IPR003441NAC domain
PROSITE profilePS5100561.8896156IPR003441NAC domain
PfamPF023655.7E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPSDEELV GYYLKRKVHG RKIELDIIPE VDLYKCEPWD LPDKSFLPNR  60
DLEWYFFSPR DKKYPNGTRT NRATEAGYWK ATGKDRKVSS KSSVIGTKKT LVFYRGRAPQ  120
GRRTDWVMHE YRLDETQCEG AAGVQDAFVL CRVFKKNGIE PRIECWNEPP IQTNALPSVM  180
TNSFSDKNTN LGAVEDMSDK DYPQVKREEA DIQADPTLQS ETSFERLNDR TDNSASLNQW  240
LEFLLDDSNP SYILTSPANA RNDLKVSSML GGARLEQESL LPMFKIDNFS QGLADLSFNQ  300
STYQIEPVLS HRMDVCFEEE DVLDEILNVA QASQDENTHT EHSFFMAKLS GNLVGDSLQF  360
DNTYNLWGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-56115712166NO APICAL MERISTEM PROTEIN
1ut4_B4e-56115712166NO APICAL MERISTEM PROTEIN
1ut7_A4e-56115712166NO APICAL MERISTEM PROTEIN
1ut7_B4e-56115712166NO APICAL MERISTEM PROTEIN
3swm_A4e-56115715169NAC domain-containing protein 19
3swm_B4e-56115715169NAC domain-containing protein 19
3swm_C4e-56115715169NAC domain-containing protein 19
3swm_D4e-56115715169NAC domain-containing protein 19
3swp_A4e-56115715169NAC domain-containing protein 19
3swp_B4e-56115715169NAC domain-containing protein 19
3swp_C4e-56115715169NAC domain-containing protein 19
3swp_D4e-56115715169NAC domain-containing protein 19
4dul_A4e-56115712166NAC domain-containing protein 19
4dul_B4e-56115712166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028066844.11e-108NAC domain-containing protein 45 isoform X2
SwissprotA4VCM02e-89NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A2I4GR401e-105A0A2I4GR40_JUGRE; NAC domain-containing protein 45-like isoform X1
STRINGXP_009367106.11e-103(Pyrus x bretschneideri)
STRINGXP_009367117.11e-103(Pyrus x bretschneideri)
STRINGXP_010105605.11e-104(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.17e-97NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]