PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_18958g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 333aa MW: 37443.2 Da PI: 9.5043

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_18958g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165	2.6e-51	14	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 l pGfrFhPtdeel+ +yLkkkv++++l++ ++i+e+d+yk++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nr++ sgyWkatg+dk++ ++ MA_18958g0010 14 LSPGFRFHPTDEELLIHYLKKKVSSSPLPA-SIIAEIDLYKHDPWDLPAKACFGEQEWYFFSPRDRKYPNGARPNRSAGSGYWKATGTDKPIAVTs 108 579*************************.89***********8777899*********************************9997 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk+Lvfykg+ kg kt+W+mheyrl MA_18958g0010 109 gstSSQKVGVKKSLVFYKGKPLKGLKTNWIMHEYRL 144 8877888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-62	9	169	IPR003441	NAC domain
PROSITE profile	PS51005	59.855	14	169	IPR003441	NAC domain
Pfam	PF02365	2.3E-27	16	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEGLAFHQQV LPQLSPGFRF HPTDEELLIH YLKKKVSSSP LPASIIAEID LYKHDPWDLP 60 AKACFGEQEW YFFSPRDRKY PNGARPNRSA GSGYWKATGT DKPIAVTSGS TSSQKVGVKK 120 SLVFYKGKPL KGLKTNWIMH EYRLAETMLT ERKGSMRLDD WVLCRIYQKV SQPARVFSWP 180 ELEAPSPADV GQKLAMPKFG SSSRLLQNEG PFMESFLSHG TSDTNEAHSY MEPSSSHQVV 240 PEQQNKLNSN PRGRVPMPMG FNGDEASSVN ANKRQNTQNP SSSSLHLQSW NPYVAGVALD 300 EHRHRFPFNK NSNPELPAWP LPPGNVWLSY DSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-72	11	171	12	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-72	11	171	12	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-72	11	171	12	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-72	11	171	12	167	NO APICAL MERISTEM PROTEIN
3swm_A	3e-72	11	171	15	170	NAC domain-containing protein 19
3swm_B	3e-72	11	171	15	170	NAC domain-containing protein 19
3swm_C	3e-72	11	171	15	170	NAC domain-containing protein 19
3swm_D	3e-72	11	171	15	170	NAC domain-containing protein 19
3swp_A	3e-72	11	171	15	170	NAC domain-containing protein 19
3swp_B	3e-72	11	171	15	170	NAC domain-containing protein 19
3swp_C	3e-72	11	171	15	170	NAC domain-containing protein 19
3swp_D	3e-72	11	171	15	170	NAC domain-containing protein 19
4dul_A	2e-72	11	171	12	167	NAC domain-containing protein 19
4dul_B	2e-72	11	171	12	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115957	1e-176	BT115957.1 Picea glauca clone GQ03709_H02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006841705.1	3e-88	NAC transcription factor 56
TrEMBL	D5ABS0	1e-125	D5ABS0_PICSI; Uncharacterized protein
STRING	ERN03380	1e-87	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	5e-85	NAC domain containing protein 47