PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_18777g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 29027.8 Da PI: 7.3632 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.4 | 2.3e-07 | 189 | 230 | 5 | 50 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveY 50 h +Er+RR+++ + f+ Lr l+P + +K a++L ++ +Y MA_18777g0020 189 HVVAERKRREQMSDVFSALRALVPVN-----PKnAGRATVLLQTKDY 230 8899********************96.....2335566666666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.309 | 184 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-13 | 184 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-13 | 188 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.37E-8 | 188 | 239 | No hit | No description |
Pfam | PF00010 | 1.1E-4 | 189 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-7 | 190 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MCSPSSSPKF LLDDIYKTSV EAIDRSKIDD YKGCEHDFID PLTHWQVDSF ESVAADDLCC 60 CLPPTSFNDL ASSDLVLQNQ IGIDNGQLSL QLDESIISVF NEGINSNWTG LGLSFNQKRN 120 SAFVEWKAIN PDSTRSCKRQ KYSSLQKRCI RFLNDINNHR ILRPLGYNNN SGKRSMAVSN 180 NYDKLAIHHV VAERKRREQM SDVFSALRAL VPVNPKNAGR ATVLLQTKDY VIALKKDIQQ 240 LEQRNRELEA LLCQES |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 197 | ERKRRE |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP12009 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 6e-10 | bHLH family protein |