PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_18454g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 21011.6 Da PI: 10.3713 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.7 | 4.6e-21 | 26 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd ++ ++r++lg+f+tae+Aa+a+++a+++l+g MA_18454g0020 26 THFRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDTAEDAARAYDEAARALRG 76 589*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.72E-28 | 26 | 84 | No hit | No description |
Pfam | PF00847 | 1.0E-13 | 26 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 27 | 85 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.7E-35 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.682 | 27 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MAVETMRRAR VGIGGCESES RAVKETHFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDTA 60 EDAARAYDEA ARALRGPKAK TNFALAADNT ASAALARTTN ARWTRTLHPQ KQWPHDLKAS 120 SVPALESNKR HKVFLGSDCR PEFESRNNSP CAALSEQKTS SSLRKTPLLL DLNLPPSIDE 180 DNDNESAAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 24 | 85 | 2 | 64 | ATERF1 |
3gcc_A | 6e-22 | 24 | 85 | 2 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102160 | 0.0 | BT102160.1 Picea glauca clone GQ0167_K20 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278126.1 | 3e-40 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
Swissprot | Q9LW49 | 8e-33 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | D5A9F4 | 1e-134 | D5A9F4_PICSI; Uncharacterized protein | ||||
STRING | XP_010278126.1 | 1e-39 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 9e-25 | ethylene responsive element binding factor 3 |