PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_183543g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 439aa    MW: 49007.1 Da    PI: 6.4605
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_183543g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.5e-51301581129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelv++yL+kk+ +++++  ++i e+d++k+ePwdL +k+k +ekewyfF  rd+k ++g r nr+t++gyWk+tgkd+evls+
  MA_183543g0010  30 LPPGFRFHPTDEELVTHYLTKKILDSTFSG-RAIGEADLNKCEPWDLLEKAKMGEKEWYFFGLRDRKFTRGLRINRTTEAGYWKTTGKDREVLSS 123
                     79**************************99.89**************9899999***************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +++l+g+kktLvf kgrapkgekt+Wvmheyrle
  MA_183543g0010 124 vSSALIGMKKTLVFLKGRAPKGEKTNWVMHEYRLE 158
                     88899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-6026183IPR003441NAC domain
PROSITE profilePS5100557.4630183IPR003441NAC domain
PfamPF023651.2E-2631157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MISGGDIELG MQSTLIPMNI AHEDEAQSEL PPGFRFHPTD EELVTHYLTK KILDSTFSGR  60
AIGEADLNKC EPWDLLEKAK MGEKEWYFFG LRDRKFTRGL RINRTTEAGY WKTTGKDREV  120
LSSVSSALIG MKKTLVFLKG RAPKGEKTNW VMHEYRLEGK FSDHHLPKNC KLDDWVVCRI  180
FEKSAGGRSS TGLMRRNAYL DLPGSPSLPT LLKSPFNKTA VNDQETRSSE SDSGTSAKIH  240
DFSFFSKLME PVANMTGHHL HQFQCGSSSS YADTSDQLSE VGRLMKHSSY MHNDLNDPRT  300
YMNMIPTATP SSVSNMGCDQ ISVILDKQPG IEQLLGLPSS IIYNPHMLLP SNSSNLGFTT  360
DAYFSALHPS DAVSKGLVSQ FTLRETEPSF ISCVHHSVGV SNNNNSMGLN NSVHNFQWGE  420
DFSGDMNDEM TYALCSRLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-50181884170NO APICAL MERISTEM PROTEIN
1ut4_B2e-50181884170NO APICAL MERISTEM PROTEIN
1ut7_A2e-50181884170NO APICAL MERISTEM PROTEIN
1ut7_B2e-50181884170NO APICAL MERISTEM PROTEIN
3swm_A2e-50181887173NAC domain-containing protein 19
3swm_B2e-50181887173NAC domain-containing protein 19
3swm_C2e-50181887173NAC domain-containing protein 19
3swm_D2e-50181887173NAC domain-containing protein 19
3swp_A2e-50181887173NAC domain-containing protein 19
3swp_B2e-50181887173NAC domain-containing protein 19
3swp_C2e-50181887173NAC domain-containing protein 19
3swp_D2e-50181887173NAC domain-containing protein 19
4dul_A2e-50181884170NAC domain-containing protein 19
4dul_B2e-50181884170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260303.13e-89PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
TrEMBLG0LD341e-134G0LD34_GINBI; NACa protein (Fragment)
STRINGXP_010260303.11e-88(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-85NAC domain containing protein 100