PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_182489g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HRT-like | ||||||||
Protein Properties | Length: 216aa MW: 24338.3 Da PI: 10.9556 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 47.3 | 3.4e-15 | 119 | 149 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++ +dG++C+++P k RKRC+ HKG +i MA_182489g0010 119 ICGALQGDGTICTATPLKNRKRCADHKGLKI 149 8***************************986 PP | |||||||
2 | HRT-like | 53.3 | 4.5e-17 | 182 | 211 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+ledGs+Ck P kgRKRC HKGmRi MA_182489g0010 182 CGVLLEDGSICKIVPDKGRKRCNIHKGMRI 211 *****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGTKAQAEKT EAQLLKVFDY AWNRGGNVAR RPHDVLLKLE KLSSQTMLES LRRLVVQKKW 60 LLFGKKVGIR IDGTKPANTE KVNKRNTLPR IIFGALTFSR NRPRSLSKNG SIDNKRKNIC 120 GALQGDGTIC TATPLKNRKR CADHKGLKIQ KEKKLSKINN INSNIVSSNQ GVEEHENEYT 180 YCGVLLEDGS ICKIVPDKGR KRCNIHKGMR ITSQAR |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5248 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 2e-29 | effector of transcription2 |