PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_181986g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 453aa MW: 50773.7 Da PI: 6.5793 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107 | 1e-33 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt eLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl MA_181986g0010 45 KPRLKWTAELHERFVDAVSQLGGPDKATPKSVMRVMGVKGLTLYHLKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.046 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-32 | 43 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-16 | 44 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-24 | 45 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-9 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.5E-23 | 146 | 192 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 453 aa Download sequence Send to blast |
MEKMYQVKNT VSSNGSVPSH SERSLLLQGS NGPGEMGLVL STDPKPRLKW TAELHERFVD 60 AVSQLGGPDK ATPKSVMRVM GVKGLTLYHL KSHLQKYRLG KHLHMVVNLD NNKNGCSAAA 120 SKTSEMQGAS SAASSMIGAN KTDALQINEA VRMQFEVQRR LHEQIEVQQH LQLRIEAQGK 180 YLQSVLEKAR ETLAGHNLGS VGLEAARAEI SELASKVSSE CLNNAFSSLP EMPSLYKQQQ 240 HMVQAVHSLN QQSQVTDYSM ESCLTSNESS EKNLDRNMQN AGKKRLRTFQ NRNVPFWQTE 300 PREDASLREL SATQLSWEEN LKEDEKFLSS SANPKDSDRN SIPTKGNLRE RTTSFRVQTE 360 ENGYGMPDAR EKQMEVNGSC VGQVIKPEVS RSFSLQEVCQ KEFHRDEDES PSVSFNKLSK 420 LTEELDLNAN DDTSIASNCR EFDLNGYGWT YEH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-19 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-19 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-19 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-19 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-19 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-19 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-19 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-19 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-19 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-19 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-19 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-19 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT109382 | 0.0 | BT109382.1 Picea glauca clone GQ03207_M13 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-85 | G2-like family protein |