PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_18153g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 368aa    MW: 41348.9 Da    PI: 7.3636
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_18153g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53181471128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ 
  MA_18153g0010  18 LPPGFRFHPTDEELVVHYLKKKASSTPLPV-TIIAEIDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSt 112
                    79****************************.89***************8888999**************************************998 PP

            NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy gr pkg kt+W+mheyrl
  MA_18153g0010 113 sgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 147
                    888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-6410177IPR003441NAC domain
PROSITE profilePS5100561.99718177IPR003441NAC domain
PfamPF023655.6E-2819147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDSPASFSGS HQHQQPQLPP GFRFHPTDEE LVVHYLKKKA SSTPLPVTII AEIDLYKFDP  60
WELPGKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPILT STSGGTQKVG  120
VKKALVFYGG RPPKGIKTNW IMHEYRLADS GARPSSFPNK KGSLRLDDWV LCRIYKKHGH  180
SQRVQGGERD ESPSADEVMA SLPDIDQQNK LQLPKLGSFS GLLESDDPFI EGFLNDEAMG  240
GNGNSSRLPQ VQSSNVSHNN FSNNNDNNSD CPFDVVPKQE ALAVETENKF NSLKRTLSLA  300
YGDDETHPEK RFNNMQNNYS YNVNNNVSAL LNSMQPNQAF QQQNFLSGLN DSPQNFRLPY  360
IQNMHWSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-751518314171NO APICAL MERISTEM PROTEIN
1ut4_B2e-751518314171NO APICAL MERISTEM PROTEIN
1ut7_A2e-751518314171NO APICAL MERISTEM PROTEIN
1ut7_B2e-751518314171NO APICAL MERISTEM PROTEIN
3swm_A2e-751518317174NAC domain-containing protein 19
3swm_B2e-751518317174NAC domain-containing protein 19
3swm_C2e-751518317174NAC domain-containing protein 19
3swm_D2e-751518317174NAC domain-containing protein 19
3swp_A2e-751518317174NAC domain-containing protein 19
3swp_B2e-751518317174NAC domain-containing protein 19
3swp_C2e-751518317174NAC domain-containing protein 19
3swp_D2e-751518317174NAC domain-containing protein 19
4dul_A2e-751518314171NAC domain-containing protein 19
4dul_B2e-751518314171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111670.0BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841705.11e-122NAC transcription factor 56
SwissprotA2YMR08e-94NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLW1P8R51e-121W1P8R5_AMBTC; Uncharacterized protein
STRINGERN033801e-122(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-94NAC domain containing protein 25