PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_18002g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TALE | ||||||||
Protein Properties | Length: 836aa MW: 91865.6 Da PI: 6.8457 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.6 | 4.9e-09 | 510 | 547 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + MA_18002g0010 510 FEHflHPYPKDADKHLLARQTGLTRSQVSNWFINARVR 547 564459******************************88 PP | |||||||
2 | BELL | 122.7 | 1.5e-39 | 373 | 444 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+ +l+eVd+rY+qy++q+++v+ssFea+ag g+ak YtslAlk+iSrhFr+L+daia+qi MA_18002g0010 373 DRQELQMKKAKLVAMLDEVDRRYRQYYHQMHIVVSSFEAAAGFGAAKTYTSLALKTISRHFRSLRDAIAGQI 444 699********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.4E-59 | 285 | 442 | IPR006563 | POX domain |
Pfam | PF07526 | 8.5E-48 | 291 | 441 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.969 | 488 | 551 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.84E-12 | 491 | 552 | No hit | No description |
SMART | SM00389 | 6.2E-9 | 491 | 555 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-17 | 492 | 558 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 494 | 558 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-17 | 508 | 547 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 836 aa Download sequence Send to blast |
MATYFPGSNI QPDTMQTLYL MNPDYTGYAD MQTPGNMVLI NQSTGTPSAN SHLAGSGQPQ 60 QHFIGIPFPS APHPQRYSMA SVESSGGTQQ DVTSTLLSSR LGNHGYNVWR NVGNELTFMQ 120 PTDPTPHNNQ SLSGQLNNFS NLGHQSVSEI SPTGMKRATM SSIPEQQLGM NPNGLGLQLD 180 QSHGLAAHGR GLSLSLSPQQ LSNIQLSCFQ NQPTDSEVNC PTISEATSQE NMNRADRLTS 240 KLSGSLSSFR ASSRDGMLGT KFLGTVNGSE CNKQMHHGTN AIGAAELSNS LTGSKYFKAA 300 QQLLDEVVNV GKGIKSDSVN HQKSQTWFGT ISDKKNIGTE ATTNDRTTSA ITGPSISAQE 360 MKNEHAFGLT PADRQELQMK KAKLVAMLDE VDRRYRQYYH QMHIVVSSFE AAAGFGAAKT 420 YTSLALKTIS RHFRSLRDAI AGQIRLTSKN LGEEDLTGSG KGETSRLHFV DQQLRQQRAL 480 QQLGMIQQHA WRPQRGLPER AVSILRAWLF EHFLHPYPKD ADKHLLARQT GLTRSQVSNW 540 FINARVRLWK PMVEEMYMEE LREADTQNRA ADSKVTTESG QNNEETVSKE GPGNSENGQE 600 EKSKKNRTLN NSIEEGGYMQ QNGGFKPDQA SDRINGRNQT TGMTGVSDSH VFHEIDNEDP 660 RQGQQKKVRN GIQDSTILLP PNMGMDVDLK SEETGSEYIL DTSKFASDEK HASEGYSFAN 720 NKMVRLDDSG SFGSYQLGGL SRYGQETFTP KYSGIGGVSL TLGLQHCDDL SLSGTQQSYN 780 SSQGLGSGRR HDLGSDSDDY CHIHDTSAVR GASTYDNMSM QNGKRFATHM LHDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 497 | 554 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 497 | 554 | 1 | 58 | Homeobox protein Meis1 |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117676 | 0.0 | BT117676.1 Picea glauca clone GQ03907_E01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9RM18 | 0.0 | A0A0C9RM18_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11489_4138 transcribed RNA sequence |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 3e-99 | BEL1-like homeodomain 1 |