PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_178860g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 631aa    MW: 71284.5 Da    PI: 8.3408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_178860g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13472518455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++Lq
  MA_178860g0010 472 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLGDAIAYIQELQ 518
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.3E-5651232IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.971468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-18471533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-14471522No hitNo description
Gene3DG3DSA:4.10.280.101.4E-18472532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-11472518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-17474523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.68E-4568625No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MGTETATALK FWNEEDKDMV KAVLGPNAFE HLIMSFLSCE GLVAGVSDSA LQQKLQYLVE  60
FSSSINWTYS IFWQLSRSKV GDYVLGWGDG YFKEPKHGEE MARRFNESET EQRMKKKVLQ  120
KLHIFFGGAK DDDFAMGLDN VSDTEMFYLT SMYYSFPRGV GVPGKALGSG QYIWLKDAHR  180
TSNSISRRSF VARSGGIQTI LCVPTDTGVV ELGSVDSIKE NKEVVQMVKS IFNDHQVQQL  240
GHSRGSALSR SPARVPEIHP LSREKDVQES AVVPFKLYEY GAHQKVVAQD YRKVFGQDLN  300
SGRTRTLVDD KFISSKMENR LLQPVLRAPN GHQHEYYLNG DKIFYGSNKK GFQSITLNQV  360
CSSEEGDIND SRHDYHQQKH GNGVLILNND NNNLKWSKEE NKIKERQRQQ QQSQMEFSGT  420
SRSIVSLRHC VAESEHSDAD APCKDDKSPL VDERRPRKRG RKPANGREEP LNHVEAERQR  480
REKLNQRFYA LRAVVPKISK MDKASLLGDA IAYIQELQKK LKDMEKEKET QEKTSHAPAV  540
APQGNIPAVV NNNSIFDVDV QIVNGDAVIR VTCPRESHPV ARVMLALQEM QLDVQQADVS  600
TAKEMIFHTF IVKLNGAQEL TKEKLVAAIS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-31472335193Transcription factor MYC3
4rqw_B3e-31472335193Transcription factor MYC3
4rs9_A3e-31472335193Transcription factor MYC3
4yz6_A3e-31472335193Transcription factor MYC3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453461RRPRKRGRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1076370.0BT107637.1 Picea glauca clone GQ03110_N06 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.39e-69bHLH family protein