PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_178646g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | RAV | ||||||||
Protein Properties | Length: 553aa MW: 61003.4 Da PI: 8.459 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.8 | 4.9e-12 | 196 | 244 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW ++I++ ++r++lg+f +e+Aa+a+++a+ k++g MA_178646g0010 196 SQYKGVVPQP-NGRWGSQIYEK-----HQRVWLGTFNREEDAARAYDRAAIKFRG 244 78****9888.8*********3.....5************************998 PP | |||||||
2 | B3 | 102.8 | 1.9e-32 | 310 | 415 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+ tpsdv+k++rlv+pk++ae++ gg+k +++ l++ed + ++W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ s MA_178646g0010 310 FDKTVTPSDVGKLNRLVIPKQHAEKYfpldvasGGSKGKGVLLSFEDGTDKTWRFRYSYWNSSQSYVLTKGWSRYVKEKRLQAGDIVTFERIS-S 403 89*******************************9999*****************************************************998.8 PP EE..EEEEE-SS CS B3 89 efelvvkvfrks 100 +++l+++++r+s MA_178646g0010 404 SRHLFISFRRRS 415 888999999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.97E-17 | 196 | 252 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.63E-14 | 196 | 251 | No hit | No description |
Pfam | PF00847 | 8.6E-7 | 197 | 244 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-28 | 197 | 258 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-21 | 197 | 252 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.625 | 197 | 252 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-40 | 302 | 416 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.36E-33 | 305 | 418 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.30E-29 | 308 | 413 | No hit | No description |
PROSITE profile | PS50863 | 14.226 | 310 | 415 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-26 | 310 | 415 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-30 | 310 | 414 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MQWTRTVMSL SQVIMTSSRR PRCMGQSVCS INPESSFLLN FVIASELQWH FSRPENMSAS 60 VVAVPVQAAL CNLLKAVGND NCDMGLRLGR CYSPLKEESS SNSREPSSNS TAVCRKKAMG 120 ADSTRTDNEE AGSVIENDSN SSPAPAGKSV CSNSSSFADR EGLERMGSGI SAVSFENTNI 180 PSAQGEENSC KRLPSSQYKG VVPQPNGRWG SQIYEKHQRV WLGTFNREED AARAYDRAAI 240 KFRGGDAITN FNFVDSHPEA VFLRGHSKYE IVDMLRKHTY DEELDQNKSS SHINPEVARS 300 NPLEPREHLF DKTVTPSDVG KLNRLVIPKQ HAEKYFPLDV ASGGSKGKGV LLSFEDGTDK 360 TWRFRYSYWN SSQSYVLTKG WSRYVKEKRL QAGDIVTFER ISSSRHLFIS FRRRSCGFLP 420 PAAPLPKLCP QSVDPLAVTG YPHWAQFFYA APPLMNAVAE CSIPGRASPD SLYFHDSKAL 480 EPTASYDGNP SSLVFVNLER TSLSTDGGSL SSSSVRLFGV NLQRSPLNLF PGSAVEEDVT 540 GNTKKRKAAA LPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-46 | 303 | 414 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-46 | 303 | 414 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00025 | PBM | Transfer from AT1G68840 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006843763.2 | 1e-105 | AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A0D6QRH5 | 1e-130 | A0A0D6QRH5_ARACU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 3e-90 | related to ABI3/VP1 2 |