PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_178280g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 471aa    MW: 52888.9 Da    PI: 5.2782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_178280g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-09383425754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      +ErrRR+r+N+++  Lr+++P+ +      K++  ++L  ++eY k+L
  MA_178280g0020 383 LAERRRRKRLNERLCMLRSVVPTiS------KMDRTSVLSDTIEYTKQL 425
                     58*********************66......**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.602376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14378441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-13383437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7383425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDTSIYAPTC LNQAIAESPW DNNTNGHIDI PKYRVLQEVN GIALKDSNLE TANSVLNVIG  60
VTRNPNTELV LEDIKSQYGA DTFEGCTHSQ RDPCAWNPIS PWDFHENSIR HGYCQSSKCF  120
KTESREDGGD FGLSSGVELE QNAFGDGTVF KSENSNALHK DPSLDLEKNS WERFSGQALQ  180
SELGLICTNV SDISHVGSES SNFSLRYMHE NFRKSTTGKP YHGMSFNQYD EMEMNRRLFS  240
YTTENVTSTL LDEQRTSIEL FGIEGTKGIA AVFVNEPDGS DGEMLLSTSY KTEIYSDEQS  300
PDTVDLPVKH SEKMVPINTA ERKVANKDGN REENDSITKG LMVKNGDNGA MVTFTTGEIE  360
SSYAKAVGGG MRKGKGQPAK NLLAERRRRK RLNERLCMLR SVVPTISKMD RTSVLSDTIE  420
YTKQLLHQIR FLQRELEPQT DWPALLEPIK DTFGQRPWLG TKNLQTNKFS R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384391ERRRRKRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1123340.0BT112334.1 Picea glauca clone GQ03313_I24 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.44e-10bHLH family protein