PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_17724g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 414aa    MW: 46087.8 Da    PI: 8.6423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_17724g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05184207123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y Cp+Cg+ +s  + L++H+ t H
  MA_17724g0010 184 YACPICGEICSKCEVLEQHQATkH 207
                    89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280186207IPR007087Zinc finger, C2H2
SuperFamilySSF563991.34E-23209413No hitNo description
Gene3DG3DSA:3.90.228.103.5E-19210413IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAQAKIFLKG FLALGVLILQ LLGCLFATAI TATKKRASEH KVSSWSSIKK FLTCKLDTNE  60
VHDPKKEAKQ SLKKCYHNIG CSGSFYSLRD IVHGNTRVMH RPETSPENSS RSSQEIVVSD  120
HSRVSMGSST RSLASPKPQF TIHEAQGSFR GVHLRKFSGC YECHVIVDPF EAMSRDASLR  180
TTIYACPICG EICSKCEVLE QHQATKHAVS ELAQDDSARN IVDIIFQTSW LKKETPCKIE  240
RVLKIHNSQR TINKFEDYRD MVKAKANKSA KKHPRCIADG NELLRFHSIT FTCSLGMDGL  300
TNLCNFPSCN VCNIIRHGFS SKVENGKGIY TTASSGKAHD SIEVSEEDES KEKRAMLVCR  360
VIAGRVNKSQ DPDECLNGGY DSLAGQTGIY SNLDELFVFN PKAVLPCFVV MYKI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6781940.0EF678194.1 Picea sitchensis clone WS0282_I08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268701.11e-130PREDICTED: uncharacterized protein LOC104605577
TrEMBLB8LQN90.0B8LQN9_PICSI; Uncharacterized protein
STRINGXP_010268701.11e-129(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-104C2H2-like zinc finger protein