PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_17689g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 752aa    MW: 83508.4 Da    PI: 5.2443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_17689g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.5e-15522568455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+Lq
  MA_17689g0010 522 SHVLAERRRREKLNEKFIVLRSLVPFV-----TKMDKASILGDAIEYLKQLQ 568
                    8999**********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-5213194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.739518567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-19519587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-16521572No hitNo description
Gene3DG3DSA:4.10.280.107.9E-20522588IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-13522568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-19524573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MAVMASANSS AIRKQLESVV QSIQWTYSIF WQLSNQQGVL EWSDGYYNGD IKTRKTVQPM  60
ELSNEELCLQ RTLQLRELYE SLSAGESNQP ARRPCAALSP EDLTDTEWYY LVCMSYTFAP  120
GVGLPGRTLA NGRLVWLCQA NEADSKVFPR ALLAKSASIQ TVVCIPIGDG VLEFGTTELE  180
REDPGLVQRT ISFFMDYPKP ICSEQSTSSP QCSDRDEKDQ VGMMTLLSSD SIVCLGRNQI  240
GASTVTDCGQ YLPTSHEDLD LPIQTFEQKD KISITEDPQQ HGLNESMQVE ICEDYKASGS  300
PEDHCCNGDA GPHEFPLISA ENDCLQNGHV NLNPAALEGW PYMEDNTSHG LQASGECVTQ  360
SIVDPSPQLC TYSQRDMNMN MNVLLGLEQG SNALETMLES AAQTLDEDGH YSRTLSTILE  420
QQQAGNLTES TGFISTKPGK DWRSRHSRQG SGFIHWKSNG NCVVGIKAVA SPQRILKKVL  480
FNLARLHSKY KEDPNYSPKL GEEEIGSKLV GRKIGQEDLS VSHVLAERRR REKLNEKFIV  540
LRSLVPFVTK MDKASILGDA IEYLKQLQRR VEELEASSKV MEAEMRKTQN RNLPKRSCSS  600
TEDMRMARHG GNHVDSCLQS SCLDGELGWT LTDTKQPPSK MPRLESKRKL NDLHKKGSCT  660
LPAREDTEVS VSVIEDDAVL IEIQCPCRHG VLLDIMQRLS SLHLDTCSVQ SSTADKMFAA  720
VLKAKVQEKF GGSKRPSIAE VKEAVELVAS KC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-2381945192Transcription factor MYC3
4rqw_B3e-2381945192Transcription factor MYC3
4rs9_A3e-2381945192Transcription factor MYC3
4yz6_A3e-2381945192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1526531ERRRRE
2527532RRRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1312270.0KU131227.1 Picea abies transcription factor bHLH-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9640.0A0A167V964_PICAB; Transcription factor bHLH-2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-75bHLH family protein